Stem-loop sequence mghv-mir-M1-12

AccessionMI0016252 (change log)
DescriptionMouse gammaherpesvirus 68 miR-M1-12 stem-loop
Stem-loop 
   -guaa    ---       u      u  aaauuaa 
5'      gggu   acucuca caccaa gu       u
        ||||   ||||||| |||||| ||       a
3'      ccca   ugagggu gugguu ca       u
   uuuuc    ucc       -      u  aacgaug
Get sequence
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (EMBL:U97553.1) Overlapping transcripts
U97553: 1720-1789 [+]
intergenic
Clustered miRNAs
< 10kb from mghv-mir-M1-12
mghv-mir-M1-1U97553: 196-260 [+]
mghv-mir-M1-10U97553: 262-322 [+]
mghv-mir-M1-2U97553: 562-627 [+]
mghv-mir-M1-3U97553: 638-698 [+]
mghv-mir-M1-11U97553: 759-811 [+]
mghv-mir-M1-4U97553: 956-1049 [+]
mghv-mir-M1-5U97553: 1255-1314 [+]
mghv-mir-M1-6U97553: 1319-1381 [+]
mghv-mir-M1-7U97553: 1660-1719 [+]
mghv-mir-M1-12U97553: 1720-1789 [+]
mghv-mir-M1-13U97553: 3749-3808 [+]
mghv-mir-M1-8U97553: 3806-3876 [+]
mghv-mir-M1-14U97553: 5102-5161 [+]
mghv-mir-M1-15U97553: 5461-5514 [+]
mghv-mir-M1-9U97553: 5525-5584 [+]
Database links

Mature sequence mghv-miR-M1-12-5p

Accession MIMAT0018170
Previous IDsmghv-miR-M1-12*
Sequence

3 -  

aaggguacucucaucaccaaugu

 - 25

Get sequence
Evidence experimental; 454 [1]

Mature sequence mghv-miR-M1-12-3p

Accession MIMAT0018171
Previous IDsmghv-miR-M1-12
Sequence

45 -  

uuuggugugggaguccuaccccuuu

 - 69

Get sequence
Evidence experimental; 454 [1], Northern [1-2], Illumina [2], RT-PCR [2]

References

1
PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
2
PMID:20660200 "Identification of novel microRNA-like molecules generated from herpesvirus and host tRNA transcripts" Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW J Virol. 84:10344-10353(2010).