Stem-loop sequence mghv-mir-M1-13

Accession

MI0016253 (change log)

Description

Mouse gammaherpesvirus 68 miR-M1-13 stem-loop

Stem-loop

   u        -  ugu    -    -c   u 
5'  gggaagag uc   ugag uggc  gcg a
    |||||||| ||   |||| ||||  ||| g
3'  uucuucuc ag   acuc aucg  ugu g
   u        g  ugu    u    aa   u 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (EMBL:U97553.1): U97553: 3749-3808 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mghv-mir-M1-13

• mghv-mir-M1-1: U97553: 196-260 [+]
• mghv-mir-M1-10: U97553: 262-322 [+]
• mghv-mir-M1-2: U97553: 562-627 [+]
• mghv-mir-M1-3: U97553: 638-698 [+]
• mghv-mir-M1-11: U97553: 759-811 [+]
• mghv-mir-M1-4: U97553: 956-1049 [+]
• mghv-mir-M1-5: U97553: 1255-1314 [+]
• mghv-mir-M1-6: U97553: 1319-1381 [+]
• mghv-mir-M1-7: U97553: 1660-1719 [+]
• mghv-mir-M1-12: U97553: 1720-1789 [+]
• mghv-mir-M1-13: U97553: 3749-3808 [+]
• mghv-mir-M1-8: U97553: 3806-3876 [+]
• mghv-mir-M1-14: U97553: 5102-5161 [+]
• mghv-mir-M1-15: U97553: 5461-5514 [+]
• mghv-mir-M1-9: U97553: 5525-5584 [+]

Database links

• miRBase Tracker:MI0016253

Mature sequence mghv-miR-M1-13-5p

• Accession: MIMAT0018172
• Previous IDs: mghv-miR-M1-13*
• Sequence: 1 - ugggaagagucuguugaguggc - 22
• Evidence: experimental; 454 [1], Illumina [2], Northern [2], RT-PCR [2]

Mature sequence mghv-miR-M1-13-3p

• Accession: MIMAT0018173
• Previous IDs: mghv-miR-M1-13
• Sequence: 39 - uaucucaugugagcucuucuuu - 60
• Evidence: experimental; 454 [1], RT-PCR [1]

References

1. PMID:20668074 "Identification and analysis of expression of novel microRNAs of murine gammaherpesvirus 68" Zhu JY, Strehle M, Frohn A, Kremmer E, Hofig KP, Meister G, Adler H J Virol. 84:10266-10275(2010).
2. PMID:20660200 "Identification of novel microRNA-like molecules generated from herpesvirus and host tRNA transcripts" Reese TA, Xia J, Johnson LS, Zhou X, Zhang W, Virgin HW J Virol. 84:10344-10353(2010).