miRBase entry: tca-mir-279c

Stem-loop tca-mir-279c


Accession
MI0016312
Description
Tribolium castaneum tca-mir-279c precursor miRNA

Literature search
2 open access papers mention tca-mir-279c
(8 sentences)

Sequence

uuucgccgcuuaaauucauauuuuuuuCGGGUGUUCGUUUCGAGUCACAuugugauugauuuugUGACUAGAUCGAACAUUCGCUCGaaguauggaaaaauccgcgggacuu
..((.((((.....((((((((((...((((((((((..((.(((((((..((.....))..))))))).)).))))))))))...)))))))))).......))))))...

Structure
-uu  g    --uuaaa          uuu          UU  G       uu  g 
   uc ccgc       uucauauuuu   CGGGUGUUCG  UC AGUCACA  gu a
   || ||||       ||||||||||   ||||||||||  || |||||||  || u
   ag ggcg       agguaugaaG   GCUUACAAGC  AG UCAGUgu  ua u
uuc  -    ccuaaaa          CUC          -U  A       uu  g 


Annotation confidence Not enough data
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Genome context
ChLG3: 15204345-15204456 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from tca-mir-279c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-279c-5p

Accession MIMAT0018730
Description Tribolium castaneum tca-miR-279c-5p mature miRNA
Sequence 28 - CGGGUGUUCGUUUCGAGUCACA - 49
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-279c-3p

Accession MIMAT0018731
Description Tribolium castaneum tca-miR-279c-3p mature miRNA
Sequence 65 - UGACUAGAUCGAACAUUCGCUCG - 87
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696