miRBase entry: tca-mir-3851f

Stem-loop tca-mir-3851f


Accession
MI0016340
Description
Tribolium castaneum tca-mir-3851f precursor miRNA
Gene family
MIPF0001201; mir-3851


Sequence

uguuugaauuuggcgccgCGUUGAUUUGGAGUCGUAcgaugguuuuugguacucacaUAGUACGUUCCGAAUCGACUCGuuaacaaauuuuaaau
.(((((((((((..(.((.((((((((((((.(((((.(((..............))).))))))))))))))))).)).)..)))).)))))))

Structure
u       -    gc c  C            U     g   guuuuu 
 guuugaa uuug  g cg GUUGAUUUGGAG CGUAc aug      g
 ||||||| ||||  | || |||||||||||| ||||| |||       
 uaaauuu aaac  u GC CAGCUAAGCCUU GCAUG Uac      g
-       u    aa u  U            -     A   acucau 


Annotation confidence Not enough data
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Genome context
ChLG6: 8929279-8929373 [-]
Clustered miRNAs
7 other miRNAs are < 10 kb from tca-mir-3851f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3851f-5p

Accession MIMAT0018784
Description Tribolium castaneum tca-miR-3851f-5p mature miRNA
Sequence 19 - CGUUGAUUUGGAGUCGUA - 36
Evidence experimental
SOLID [1]
Database links

Mature tca-miR-3851f-3p

Accession MIMAT0018785
Description Tribolium castaneum tca-miR-3851f-3p mature miRNA
Sequence 58 - UAGUACGUUCCGAAUCGACUCG - 79
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696