miRBase entry: tca-mir-92c

Stem-loop tca-mir-92c


Accession
MI0016341
Description
Tribolium castaneum tca-mir-92c precursor miRNA
Gene family
MIPF0000013; mir-25

Literature search
1 open access papers mention tca-mir-92c
(7 sentences)

Sequence

uuuacuuaacauuuucgaggauggaacggucgguuGGGUCGUGAUUUGUGCAAAuauguuauuucguucaUAUUGCACCAGUCCCGGCCUGACugcucuuccaggaccacgccgggguguuggaggga
.........(((((....)))))....((.(((((((((((.((((.((((((.((((..........)))))))))).)))).)))))))))))))(((((((.(((.(....)))).)))))))..

Structure
----uuuacuuaacauuuucgaggauggaac  u           U    U      A    uuau 
                               gg cgguuGGGUCG GAUU GUGCAA uaug    u
                               || ||||||||||| |||| |||||| ||||     
                               uc guCAGUCCGGC CUGA CACGUU AUac    u
agggagguuguggggccgcaccaggaccuuc  -           C    C      -    uugc 


Annotation confidence Not enough data
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Genome context
ChLG7: 1764467-1764594 [+]

Database links

Mature tca-miR-92c-5p

Accession MIMAT0018786
Description Tribolium castaneum tca-miR-92c-5p mature miRNA
Sequence 36 - GGGUCGUGAUUUGUGCAAA - 54
Evidence experimental
SOLID [1]

Mature tca-miR-92c-3p

Accession MIMAT0018787
Description Tribolium castaneum tca-miR-92c-3p mature miRNA
Sequence 71 - UAUUGCACCAGUCCCGGCCUGAC - 93
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696