miRBase entry: tca-mir-3893

Stem-loop tca-mir-3893


Accession
MI0016392
Description
Tribolium castaneum tca-mir-3893 precursor miRNA


Sequence

gguuuuauuuuuCCGAUGUUACGACGGCUUUACAUGAaauuugaaucAUAAAGCUGUCAGUAACGUGGACaaauauuacu
(((..(((((.(((.(((((((((((((((((..(((........))))))))))))).)))))))))).)))))..)))

Structure
   uu     u   G       -          CA   aau 
ggu  uauuu uCC AUGUUAC GACGGCUUUA  UGA   u
|||  ||||| ||| ||||||| ||||||||||  |||    
uca  auaaa AGG UGCAAUG CUGUCGAAAU  Acu   u
   uu     C   -       A          --   aag 


Annotation confidence Not enough data
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Genome context
ChLG5: 7175554-7175633 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from tca-mir-3893
Name Accession Chromosome Start End Strand Confidence




Database links

Mature tca-miR-3893-5p

Accession MIMAT0018888
Description Tribolium castaneum tca-miR-3893-5p mature miRNA
Sequence 13 - CCGAUGUUACGACGGCUUUACAUGA - 37
Evidence experimental
SOLID [1]

Mature tca-miR-3893-3p

Accession MIMAT0018889
Description Tribolium castaneum tca-miR-3893-3p mature miRNA
Sequence 48 - AUAAAGCUGUCAGUAACGUGGAC - 70
Evidence experimental
SOLID [1]
Database links

References

  1. PubMed ID: 20817720
    Functional shifts in insect microRNA evolution
    "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
    "Genome Biol Evol (2010) 2:686-696