miRBase entry: hsa-mir-3180-5

Stem-loop hsa-mir-3180-5


Accession
MI0016409
Symbol
HGNC: MIR3180-5
Description
Homo sapiens hsa-mir-3180-5 precursor miRNA
Gene family
MIPF0000894; mir-3180

Literature search
6 open access papers mention hsa-mir-3180-5
(60 sentences)

Sequence

4113 reads, 103 reads per million, 54 experiments
gcuccgccccacgucgcaugcgccccgggaacgcgUGGGGCGGAGCUUCCGGAGgccccgcccugcugccgacccuguggagcggagggugaagccuccggaugccagucccucaucgcuggcccggucgcgcuguggcgaagggggcggagc
((((((((((.(((((((.((((.(((((...(((.(((((.(.((.(((((((((..((((((.(((((.((...)).).))))))))))..))))))))).))).)))))....)))...)))))..)))))))))))...))))))))))

Structure
          --a       u    -c     aac   ---U     G A  U         cc      g    - g  c 
gcuccgcccc   cgucgca gcgc  ccggg   gcg    GGGGC G GC UCCGGAGgc  cgcccu cugc c ac  
||||||||||   ||||||| ||||  |||||   |||    ||||| | || |||||||||  |||||| |||| | || c
cgaggcgggg   gcggugu cgcg  ggccc   cgc    cccug c cg aggccuccg  guggga ggcg g ug  
          gaa       -    cu     ggu   uacu     a -  u         aa      -    a g  u 


Annotation confidence Not enough data
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Genome context
chr16: 2135977-2136129 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from hsa-mir-3180-5
Name Accession Chromosome Start End Strand Confidence




Disease association
hsa-mir-3180-5 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-3180

Accession MIMAT0018178
Description Homo sapiens hsa-miR-3180 mature miRNA
Sequence 36 - UGGGGCGGAGCUUCCGGAG - 54
Evidence experimental
Illumina [1]
Database links
Predicted targets

References

  1. PubMed ID: 20224791
    Discovery of novel microRNAs in female reproductive tract using next generation sequencing
    Creighton CJ, Benham AL, Zhu H, Khan MF, Reid JG, Nagaraja AK, Fountain MD, Dziadek O, Han D, Ma L, Kim J, Hawkins SM, Anderson ML, Matzuk MM, Gunaratne PH
    PLoS One (2010) 5:e9637