miRBase entry: hvu-MIR159a

Stem-loop hvu-MIR159a


Accession
MI0016452
Description
Hordeum vulgare hvu-MIR159a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
13 open access papers mention hvu-MIR159a
(80 sentences)

Sequence

gguggagcuccuaucauuccaaugaagggucuaccggaaggguuugugcagcugcuuguucaugguucccacuauccuaucuccauuagaacacgaggagauaggcuugugguuugcaugaucgaggagccgcuucgaucccucgcugaccgcugUUUGGAUUGAAGGGAGCUCUGca
.(((((((((((.(((.(((((...((((((...((..((((.(((.((.(((.((((.(((((....((((...(((((((((............)))))))))...))))....))))).)))).))).))..))).))))))..)))).))..))))).))).))))))))))).

Structure
g           a   u     uga  -    uac  ga    u   -u  a   g    u     guuc    uau         auuag 
 guggagcuccu uca uccaa   ag gguc   cg  aggg uug  gc gcu cuug ucaug    ccac   ccuaucucc     a
 ||||||||||| ||| |||||   || ||||   ||  |||| |||  || ||| |||| |||||    ||||   |||||||||      
 cGUCUCGAGGG AGU AGGUU   uc ccag   gc  uccc agc  cg cga gagc aguac    ggug   ggauagagg     a
a           A   U     -Ug  g    -uc  --    u   uu  c   g    u     guuu    uuc         agcac 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
BACC01000259.1: 1889-2066 [+]

Database links

Mature hvu-miR159a

Accession MIMAT0018210
Description Hordeum vulgare hvu-miR159a mature miRNA
Sequence 156 - UUUGGAUUGAAGGGAGCUCUG - 176
Evidence not_experimental

References

  1. PubMed ID: 18521122
    Data mining for miRNAs and their targets in the Triticeae
    "Dryanova A, Zakharov A, Gulick PJ"
    "Genome (2008) 51:433-443

  2. PubMed ID: 20676715
    Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
    "Kantar M, Unver T, Budak H"
    "Funct Integr Genomics (2010) 10:493-507

  3. PubMed ID: 23324356
    Developmentally regulated expression and complex processing of barley pri-microRNAs
    Kruszka K, Pacak A, Swida-Barteczka A, Stefaniak AK, Kaja E, Sierocka I, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z
    BMC Genomics (2013) 14:34