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Developmentally regulated expression and complex processing of barley pri-microRNAs |
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|---|---|
| PubMed ID | 23324356 |
| Authors | Kruszka K, Pacak A, Swida-Barteczka A, Stefaniak AK, Kaja E, Sierocka I, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z |
| Journal | BMC Genomics |
| Volume | 14 |
| Pages | 34 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| hvu-MIR159a | MI0016452 | None | BACC01000259.1 | 1889 | 2066 | + | - |
| hvu-MIR166a | MI0016455 | None | None | None | - | ||
| hvu-MIR168 | MI0016457 | None | None | None | - | ||
| hvu-MIR171 | MI0016461 | None | None | None | - | ||
| hvu-MIR1120 | MI0016741 | None | None | None | - | ||
| hvu-MIR397b | MI0030545 | None | None | None | - | ||
| hvu-MIR156b | MI0030546 | None | None | None | - | ||
| osa-MIR156a | MI0000653 | 257272 | 1 | 22524147 | 22524246 | - | High |
| osa-MIR156b | MI0000654 | 258339 | 1 | 4666341 | 4666516 | + | High |
| osa-MIR156c | MI0000655 | 258287 | 1 | 4665975 | 4666123 | + | High |
| osa-MIR156d | MI0000656 | 375099 | 2 | 4512884 | 4513012 | - | High |
| osa-MIR156e | MI0000657 | 257257 | 4 | 25026327 | 25026430 | - | High |
| osa-MIR156f | MI0000658 | 374943 | 8 | 21478230 | 21478415 | + | High |
| osa-MIR156g | MI0000659 | 258296 | 9 | 15065253 | 15065368 | + | High |
| osa-MIR156h | MI0000660 | 374943 | 8 | 21491232 | 21491417 | + | High |
| osa-MIR156i | MI0000661 | 257274 | 2 | 24119995 | 24120084 | - | High |
| osa-MIR156j | MI0000662 | 374978 | 6 | 26554795 | 26554959 | + | High |
| osa-MIR166a | MI0000670 | 19323 | 10 | 19987135 | 19987279 | + | High |
| osa-MIR166b | MI0000671 | 19371 | 6 | 30327084 | 30327289 | - | High |
| osa-MIR166c | MI0000672 | 19151 | 3 | 3487788 | 3487912 | + | High |
| osa-MIR166d | MI0000673 | 19377 | 2 | 26130059 | 26130183 | + | High |
| osa-MIR166e | MI0000674 | 36 | 3 | 765724 | 765860 | + | High |
| osa-MIR166f | MI0000675 | 19281 | 10 | 14483290 | 14483396 | - | High |
| osa-MIR171a | MI0000680 | 7 | 6 | 25891132 | 25891227 | + | High |
| osa-MIR393a | MI0001026 | 98 | 1 | 2309149 | 2309263 | - | High |
| osa-MIR397a | MI0001049 | 361 | 6 | 28489785 | 28489898 | + | High |
| osa-MIR397b | MI0001050 | 315 | 2 | 3280781 | 3280898 | - | High |
| osa-MIR156k | MI0001090 | 871 | 9 | 18289107 | 18289212 | - | High |
| osa-MIR156l | MI0001091 | 10220 | 5 | 5230609 | 5230764 | + | High |
| osa-MIR159a | MI0001092 | 1717 | 1 | 17681923 | 17682194 | + | High |
| osa-MIR159b | MI0001093 | 1371 | 1 | 1215030 | 1215217 | + | High |
| osa-MIR159c | MI0001094 | 62 | 1 | 6556048 | 6556244 | - | High |
| osa-MIR159d | MI0001095 | 44 | 1 | 6563756 | 6563944 | - | High |
| osa-MIR159e | MI0001096 | 46 | 1 | 9760708 | 9760898 | - | Low |
| osa-MIR159f | MI0001097 | 83 | 1 | 6693112 | 6693299 | + | High |
| osa-MIR319b | MI0001099 | 227 | 1 | 6677570 | 6677766 | - | High |
| osa-MIR166k | MI0001107 | 1477 | 2 | 32435003 | 32435129 | - | High |
| osa-MIR166l | MI0001108 | 1522 | 9 | 16951817 | 16951933 | + | High |
| osa-MIR168a | MI0001115 | 282915 | 2 | 1553154 | 1553240 | - | High |
| osa-MIR168b | MI0001116 | 1 | 2 | 27336428 | 27336533 | + | - |
| osa-MIR169f | MI0001121 | 845 | 2 | 18558299 | 18558512 | - | High |
| osa-MIR171b | MI0001133 | 363 | 8 | 5369153 | 5369252 | + | Medium |
| osa-MIR171c | MI0001134 | 391 | 4 | 31713472 | 31713570 | - | High |
| osa-MIR171d | MI0001135 | 369 | 10 | 21237313 | 21237447 | + | High |
| osa-MIR171e | MI0001136 | 369 | 3 | 1970487 | 1970605 | + | High |
| osa-MIR171f | MI0001137 | 354 | 3 | 30027774 | 30027900 | + | High |
| osa-MIR171g | MI0001138 | 9 | 7 | 15636744 | 15636832 | - | High |
| osa-MIR172a | MI0001139 | 3477 | 9 | 22881834 | 22881942 | + | High |
| osa-MIR172b | MI0001140 | 201 | 1 | 42923736 | 42923973 | - | Medium |
| osa-MIR172c | MI0001141 | 199 | 7 | 13111485 | 13111595 | - | High |
| osa-MIR166g | MI0001142 | 19256 | 12 | 18329367 | 18329511 | + | High |
| osa-MIR166h | MI0001143 | 17849 | 2 | 32435174 | 32435292 | - | High |
| osa-MIR166i | MI0001144 | 443 | 3 | 25294953 | 25295097 | + | High |
| osa-MIR171h | MI0001147 | 61 | 4 | 28482456 | 28482556 | + | High |
| osa-MIR393b | MI0001148 | 216 | 4 | 34931876 | 34932007 | - | High |
| osa-MIR172d | MI0001154 | 3505 | 2 | 35143537 | 35143666 | - | High |
| osa-MIR171i | MI0001155 | 92 | 3 | 21191603 | 21191722 | + | High |
| osa-MIR166m | MI0001157 | 17946 | 8 | 23045356 | 23045555 | + | High |
| osa-MIR166j | MI0001158 | 19511 | 3 | 30392782 | 30392881 | - | - |
| zma-MIR156d | MI0001456 | 207336 | 5 | 94479574 | 94479692 | - | High |
| zma-MIR156f | MI0001457 | 135637 | 2 | 185142785 | 185142951 | - | High |
| zma-MIR156g | MI0001458 | 130978 | 7 | 120713378 | 120713498 | + | High |
| zma-MIR156b | MI0001459 | 201162 | 3 | 7690198 | 7690321 | - | Medium |
| zma-MIR156c | MI0001460 | 129128 | 3 | 7690484 | 7690622 | - | - |
| zma-MIR156e | MI0001461 | 132496 | 2 | 33057365 | 33057490 | + | High |
| zma-MIR156a | MI0001462 | 130538 | 4 | 87198600 | 87198751 | - | Medium |
| zma-MIR156h | MI0001463 | 133708 | 10 | 131033462 | 131033576 | - | High |
| zma-MIR156i | MI0001464 | 134769 | 4 | 142267696 | 142267812 | - | High |
| zma-MIR166a | MI0001480 | 353330 | 6 | 93955692 | 93955904 | + | High |
| zma-MIR166h | MI0001482 | 356574 | 1 | 281340990 | 281341065 | - | High |
| zma-MIR166e | MI0001483 | 350283 | 5 | 194582789 | 194582875 | + | High |
| zma-MIR166i | MI0001485 | 353816 | 1 | 246976607 | 246976689 | + | - |
| zma-MIR166f | MI0001486 | 356623 | 5 | 8453343 | 8453420 | + | High |
| zma-MIR166g | MI0001487 | 362638 | 1 | 13677312 | 13677437 | + | High |
| zma-MIR166b | MI0001488 | 349995 | 1 | 228668861 | 228668976 | - | High |
| zma-MIR166c | MI0001489 | 350268 | 4 | 155691275 | 155691366 | + | High |
| zma-MIR166d | MI0001490 | 349994 | 5 | 22886736 | 22886839 | - | High |
| zma-MIR171a | MI0001491 | 284 | 4 | 243049674 | 243049772 | + | - |
| zma-MIR171b | MI0001492 | 5349 | 10 | 145200482 | 145200566 | - | High |
| zma-MIR172a | MI0001493 | 5343 | 7 | 53800029 | 53800111 | - | - |
| zma-MIR172d | MI0001494 | 5334 | 6 | 179347999 | 179348072 | + | - |
| zma-MIR172b | MI0001495 | 5334 | 5 | 224242493 | 224242618 | - | - |
| zma-MIR172c | MI0001496 | 5389 | 4 | 176265726 | 176265848 | + | - |
| zma-MIR171d | MI0001792 | 4835 | 9 | 131880092 | 131880212 | + | High |
| zma-MIR171f | MI0001793 | 4292 | 5 | 9060707 | 9060861 | - | Medium |
| zma-MIR156j | MI0001808 | 1457 | 7 | 135973787 | 135973911 | - | - |
| zma-MIR159a | MI0001809 | 17754 | 8 | 10813534 | 10813779 | + | Medium |
| zma-MIR159b | MI0001810 | 27471 | 8 | 10999667 | 10999887 | + | - |
| zma-MIR159c | MI0001811 | 1799 | 3 | 2827135 | 2827351 | - | Medium |
| zma-MIR159d | MI0001812 | 1381 | 8 | 27527989 | 27528205 | + | Medium |
| zma-MIR319b | MI0001815 | 13480 | 3 | 2845355 | 2845567 | + | High |
| zma-MIR166k | MI0001817 | 67163 | 5 | 219021288 | 219021455 | - | High |
| zma-MIR166j | MI0001818 | 68413 | 7 | 129970156 | 129970309 | + | - |
| zma-MIR168a | MI0001824 | 151808 | 5 | 76381854 | 76381957 | - | High |
| zma-MIR168b | MI0001825 | 151163 | 4 | 247815828 | 247815931 | - | High |
| zma-MIR169f | MI0001827 | 1983 | 5 | 168004586 | 168004735 | + | - |
| zma-MIR171c | MI0001835 | 39 | 2 | 9342047 | 9342164 | + | - |
| zma-MIR171j | MI0001836 | 4710 | 10 | 60900756 | 60900884 | + | High |
| zma-MIR171e | MI0001837 | 4498 | 1 | 7912092 | 7912217 | + | High |
| zma-MIR171i | MI0001838 | 6821 | 1 | 279862352 | 279862455 | + | High |
| zma-MIR171g | MI0001839 | 684 | 7 | 43681357 | 43681468 | - | - |
| zma-MIR172e | MI0001840 | 2028 | 3 | 146624664 | 146624837 | + | - |
| zma-MIR166l | MI0001841 | 348977 | 3 | 92760612 | 92760748 | + | - |
| zma-MIR166m | MI0001842 | 347901 | 5 | 219021559 | 219021714 | - | High |
| zma-MIR171k | MI0001843 | 1657 | 10 | 139973227 | 139973330 | - | Medium |
| zma-MIR171h | MI0001844 | 270 | 2 | 18233872 | 18233995 | - | Medium |
| zma-MIR393a | MI0001845 | 3374 | 2 | 1029135 | 1029260 | + | Medium |
| zma-MIR156k | MI0001847 | 9178 | 6 | 106015334 | 106015456 | - | High |
| osa-MIR529a | MI0003202 | 331 | 2 | 16227805 | 16227903 | + | High |
| tae-MIR159a | MI0006170 | 705805 | 3D | 840138 | 840314 | - | High |
| tae-MIR159b | MI0006171 | 704970 | None | None | - | ||
| tae-MIR171a | MI0006175 | 200 | 5A | 134091588 | 134091717 | - | High |
| tae-MIR1120a | MI0006182 | 137 | None | None | Medium | ||
| osa-MIR1430 | MI0006970 | 54 | 12 | 6825011 | 6825152 | - | High |
| zma-MIR156l | MI0013184 | 131948 | 5 | 187671970 | 187672059 | - | High |
| zma-MIR159e | MI0013185 | 3823 | 1 | 251679551 | 251679677 | - | - |
| zma-MIR159f | MI0013186 | 15434 | 3 | 25560327 | 25560541 | - | Low |
| zma-MIR159g | MI0013187 | 1245 | 8 | 10961065 | 10961316 | + | - |
| zma-MIR159h | MI0013188 | 216 | 8 | 10934884 | 10935083 | + | - |
| zma-MIR159i | MI0013189 | 1245 | 8 | 10961065 | 10961316 | + | - |
| zma-MIR159j | MI0013190 | 20514 | 8 | 10969634 | 10969885 | + | - |
| zma-MIR159k | MI0013191 | 19488 | 8 | 10995792 | 10995991 | + | - |
| zma-MIR166n | MI0013197 | 66413 | 4 | 183131871 | 183131966 | + | High |
| zma-MIR171l | MI0013206 | 1214 | 1 | 251562587 | 251562664 | + | - |
| zma-MIR171m | MI0013207 | 2041 | 5 | 21241950 | 21242031 | - | High |
| zma-MIR171n | MI0013208 | 284 | 9 | 101975536 | 101975613 | - | - |
| zma-MIR393b | MI0013210 | 96 | 3 | 18649433 | 18649540 | + | High |
| zma-MIR393c | MI0013211 | 555 | 10 | 150904915 | 150905011 | - | High |
| zma-MIR397a | MI0013229 | 149 | 3 | 185763655 | 185763797 | - | - |
| zma-MIR397b | MI0013230 | 1114 | 5 | 84380089 | 84380172 | - | Medium |
| hvu-MIR156a | MI0016449 | None | None | None | - | ||
| tae-MIR156 | MI0016450 | 418 | None | None | High | ||
| hvu-MIR159b | MI0016451 | None | None | None | - | ||
| hvu-MIR397a | MI0016465 | None | None | None | - | ||
| tae-MIR171b | MI0016468 | 46 | 2D | 132845309 | 132845446 | - | High |
| hvu-MIR166b | MI0016742 | None | None | None | - | ||
| osa-MIR3981 | MI0017256 | 126 | 5 | 4302813 | 4302938 | + | Low |
| hvu-MIR166c | MI0018212 | None | None | None | - | ||
| tae-MIR1120b | MI0030404 | 651 | 7B | 15312620 | 15312712 | + | Medium |
| tae-MIR397 | MI0030405 | 404 | 6A | 120354266 | 120354358 | - | - |
| tae-MIR1120c | MI0030409 | 188 | 3D | 73734313 | 73734386 | + | Low |