Stem-loop osa-MIR172d

Accession

MI0001154

Description

Oryza sativa osa-MIR172d precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

79 open access papers mention osa-MIR172d
(488 sentences)

Sequence

5046 reads, 3505 reads per million, 2 experiments

aaacagucggugcuugcagguGCAGCACCAUCAAGAUUCACaucgaguucaucccuaaacgagaucgagguuggcugacuauaugugaugAGAAUCUUGAUGAUGCUGCAUcagcaaacgcucgacuacu
....((((((((.((((.(((((((((.(((((((((((.((((((((.((.((.....((....)).....)).))))).....))))).))))))))))).))))))))).)))).))).)))))...

Structure

aaac     -   c    a         C           A     -----   u  u  cuaaa  a 
    agucg gug uugc gguGCAGCA CAUCAAGAUUC Caucg     agu ca cc     cg g
    ||||| ||| |||| ||||||||| ||||||||||| |||||     ||| || ||     ||  
    ucagc cgc aacg cUACGUCGU GUAGUUCUAAG guagu     uca gu gg     gc a
-uca     u   a    a         A           A     guaua   -  c  uugga  u 

Annotation confidence High

Genome context

Chr2: 35143537-35143666 [-]

Mature osa-miR172d-3p

• Accession: MIMAT0001084
• Description: Oryza sativa osa-miR172d-3p mature miRNA
• Sequence: 91 - AGAAUCUUGAUGAUGCUGCAU - 111
• Evidence: not_experimental

Mature osa-miR172d-5p

• Accession: MIMAT0022885
• Description: Oryza sativa osa-miR172d-5p mature miRNA
• Sequence: 22 - GCAGCACCAUCAAGAUUCAC - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15685364
   Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
   "Li Y, Li W, Jin YX"
   "Acta Biochim Biophys Sin (Shanghai) (2005) 37:75-87


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176