Stem-loop hvu-MIR166b

Accession

MI0016742

Description

Hordeum vulgare hvu-MIR166b precursor miRNA

Literature search

9 open access papers mention hvu-MIR166b
(34 sentences)

Sequence

ggggaauguugucugguccgagaccuaacaccgggcggaauggcggauucagcugcagcuaagcaagcuaggugggggguuUCGGACCAGGCUUCAUUCCCC
((((((((..((((((((((((((((..((((.(((.(..((((.............))))..)..))).))))..))))))))))))))))..))))))))

Structure

        uu                aa    g   -g aa    ggauu 
ggggaaug  gucugguccgagaccu  cacc ggc  g  uggc     c
||||||||  ||||||||||||||||  |||| |||  |  ||||     a
CCCCUUAC  CGGACCAGGCUuuggg  gugg ucg  c  aucg     g
        UU                gg    a   aa ga    acguc 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR166b

• Accession: MIMAT0018500
• Description: Hordeum vulgare hvu-miR166b mature miRNA
• Sequence: 82 - UCGGACCAGGCUUCAUUCCCC - 102
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20676715
   Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
   "Kantar M, Unver T, Budak H"
   "Funct Integr Genomics (2010) 10:493-507


2. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129