Stem-loop osa-MIR171a

Accession

MI0000680

Description

Oryza sativa osa-MIR171a precursor miRNA

Literature search

52 open access papers mention osa-MIR171a
(175 sentences)

Sequence

49039 reads, 246.0 reads per million, 132 experiments

ggaaagagCGAUAUUGGUGAGGUUCAAUCCgaugauugguuuuacagcagugguaaaaucaguaucugaUUGAGCCGCGCCAAUAUCUCUuccucu
((((.((..((((((((((.(((((((((.(((.(((((((((((.......)))))))))))))).))))))))).))))))))))))))))...

Structure

---    a  gC          A         C   g           ag 
   ggaa ga  GAUAUUGGUG GGUUCAAUC gau auugguuuuac  c
   |||| ||  |||||||||| ||||||||| ||| |||||||||||  a
   ccuU CU  CUAUAACCGC CCGAGUUag cua ugacuaaaaug  g
ucu    -  --          G         u   -           gu 

Annotation confidence High

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

6: 25891132-25891227 [+]

Mature osa-miR171a-5p

• Accession: MIMAT0055914
• Description: Oryza sativa osa-miR171a-5p mature miRNA
• Sequence: 9 - CGAUAUUGGUGAGGUUCAAUCC - 30
• Evidence: experimental ; unknown

Mature osa-miR171a-3p

• Accession: MIMAT0000645
• Description: Oryza sativa osa-miR171a-3p mature miRNA
• Sequence: 70 - UUGAGCCGCGCCAAUAUCUCU - 90
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626