Stem-loop osa-MIR171a

Accession

MI0000680

Description

Oryza sativa osa-MIR171a precursor miRNA

Literature search

48 open access papers mention osa-MIR171a
(166 sentences)

Sequence

7 reads, 5 reads per million, 2 experiments

ggaaagagcgauauuggugagguucaauccgaugauugguuuuacagcagugguaaaaucaguaucUGAUUGAGCCGCGCCAAUAUCucuuccucu
((((.((..((((((((((.(((((((((.(((.(((((((((((.......)))))))))))))).))))))))).))))))))))))))))...

Structure

---    a  gc          a         c   g           ag 
   ggaa ga  gauauuggug gguucaauc gau auugguuuuac  c
   |||| ||  |||||||||| ||||||||| ||| |||||||||||  a
   ccuu cu  CUAUAACCGC CCGAGUUAG cua ugacuaaaaug  g
ucu    -  --          G         U   -           gu 

Annotation confidence Low

Comments

The stem-loop sequence represented here is predicted based on homology to miRNAs cloned from Arabidopsis [1]. Its expression has not been verified in rice.

Genome context

Chr6: 25891132-25891227 [+]

Mature osa-miR171a

• Accession: MIMAT0000645
• Description: Oryza sativa osa-miR171a mature miRNA
• Sequence: 67 - UGAUUGAGCCGCGCCAAUAUC - 87
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626