Stem-loop osa-MIR171g

Accession

MI0001138

Description

Oryza sativa osa-MIR171g precursor miRNA

Literature search

42 open access papers mention osa-MIR171g
(147 sentences)

Sequence

8414 reads, 86.0 reads per million, 129 experiments

gacauggCAUGGUAUUGACUUGGCUCAUCUcagcaacagcaaacugcaugcagcgcuggaggUGAGCCGAGCCAAUAUCACUUCAuguc
(((((((..((((((((.(((((((((((((.....((((...(((....))).))))))))))))))))).))))))))..)))))))

Structure

       CA        A             agcaa    aaa   c 
gacaugg  UGGUAUUG CUUGGCUCAUCUc     cagc   cug a
|||||||  |||||||| |||||||||||||     ||||   |||  
cuguACU  ACUAUAAC GAGCCGAGUggag     gucg   gac u
       UC        C             -----    --c   g 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context

7: 15636744-15636832 [-]

Mature osa-miR171g-5p

• Accession: MIMAT0055970
• Description: Oryza sativa osa-miR171g-5p mature miRNA
• Sequence: 8 - CAUGGUAUUGACUUGGCUCAUCU - 30
• Evidence: experimental ; unknown

Mature osa-miR171g-3p

• Accession: MIMAT0001068
• Description: Oryza sativa osa-miR171g-3p mature miRNA
• Sequence: 63 - UGAGCCGAGCCAAUAUCACUUCA - 85
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799