miRBase entry: osa-MIR171i

Stem-loop osa-MIR171i


Accession
MI0001155
Description
Oryza sativa osa-MIR171i precursor miRNA

Literature search
42 open access papers mention osa-MIR171i
(147 sentences)

Sequence

126 reads, 92 reads per million, 2 experiments
uaaaaagAGGUAUUGGCGUGCCUCAAUCcgaaggcauggcugauuacaggcaccucgaccgaucuagcgcaugcagccauguuucuuGGAUUGAGCCGCGUCAAUAUCucuccuugcuuc
.....(((((((((((((((.(((((((((((((((((((((....((.((..((.((....)).)).)).))))))))))))).)))))))))).))))))))))))))).........

Structure
----uaaaa               C          -           auua  g  ac  c  c 
         agAGGUAUUGGCGUG CUCAAUCcga aggcauggcug    ca gc  cu ga c
         ||||||||||||||| |||||||||| |||||||||||    || ||  || ||  
         ucuCUAUAACUGCGC GAGUUAGGuu uuuguaccgac    gu cg  ga cu g
cuucguucc               C          c           ----  a  -c  u  a 


Annotation confidence High
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Genome context
Chr3: 21191603-21191722 [+]

Database links

Mature osa-miR171i-3p

Accession MIMAT0001085
Description Oryza sativa osa-miR171i-3p mature miRNA
Sequence 88 - GGAUUGAGCCGCGUCAAUAUC - 108
Evidence not_experimental
Database links

Mature osa-miR171i-5p

Accession MIMAT0022886
Description Oryza sativa osa-miR171i-5p mature miRNA
Sequence 8 - AGGUAUUGGCGUGCCUCAAUC - 28
Evidence experimental
Illumina [2]
Database links

References

  1. PubMed ID: 15685364
    Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
    "Li Y, Li W, Jin YX"
    "Acta Biochim Biophys Sin (Shanghai) (2005) 37:75-87

  2. PubMed ID: 21901091
    Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
    Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
    PLoS Pathog (2011) 7:e1002176