Stem-loop osa-MIR171f

Accession

MI0001137

Description

Oryza sativa osa-MIR171f precursor miRNA

Literature search

45 open access papers mention osa-MIR171f
(187 sentences)

Sequence

501 reads, 354 reads per million, 2 experiments

gggagagugcgaUGUUGGCAUGGUUCAAUCAAAccgggcaaacuuaugcacuagcuaagcaagaugcagggauaugcaguaugguuuuguuuggucUGAUUGAGCCGUGCCAAUAUCacaagcuugc
(.(((..((.(((((((((((((((((((((.((((((((((.((((((.((.((...)).)).((((......)))))))))).)))))))))).))))))))))))))))))))).))..))).)

Structure

 g   ag  c                     A          c      --------------a  a  u 
g gag  ug gaUGUUGGCAUGGUUCAAUCA Accgggcaaa uuaugc               cu gc  
| |||  || ||||||||||||||||||||| |||||||||| ||||||               || || a
c uuc  ac CUAUAACCGUGCCGAGUUAGU ugguuuguuu gguaug               ga cg  
 g   ga  a                     c          u      acguauagggacgua  a  a 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context

Chr3: 30027774-30027900 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR171f

Mature osa-miR171f-3p

• Accession: MIMAT0001067
• Description: Oryza sativa osa-miR171f-3p mature miRNA
• Sequence: 97 - UGAUUGAGCCGUGCCAAUAUC - 117
• Evidence: not_experimental

Mature osa-miR171f-5p

• Accession: MIMAT0022880
• Description: Oryza sativa osa-miR171f-5p mature miRNA
• Sequence: 13 - UGUUGGCAUGGUUCAAUCAAA - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176