Stem-loop osa-MIR319b

Accession

MI0001099

Description

Oryza sativa osa-MIR319b precursor miRNA

Literature search

54 open access papers mention osa-MIR319b
(268 sentences)

Sequence

6888961 reads, 19828.0 reads per million, 142 experiments

gauggauggaagAGAGCGUCCUUCAGUCCACUCAugggcggugcuagggucgaauuagcugccgacucauucacccacaugccaagcaagaaacgcuugagauagcgaagcuuagcagaugagugaaugaagcgggagguaacguuccgaucucgcgccgucuuugcUUGGACUGAAGGGUGCUCCCUCcuccucga
((.(((.(((.(.(((((((((((((((((..((.(((((((((..(((((((((((.((.(((..((((((((.((..(((.((((......((((......))))..)))).)))..)).))))))))..))).)).))..))).)))))).))))))))).))..)))))))))))))))))).))))))))..

Structure

--  u   u   a A                 CU  u         ua      -   --  g  g   ac        c  ca   c    aagaaa    ug 
  ga gga gga g GAGCGUCCUUCAGUCCA  CA gggcggugc  gggucg aau  ua cu ccg  ucauucac ca  ugc aagc      cgcu  a
  || ||| ||| | |||||||||||||||||  || |||||||||  |||||| |||  || || |||  |||||||| ||  ||| ||||      ||||   
  cu ccu cCU C CUCGUGGGAAGUCAGGU  gu ucugccgcg  ucuagc uug  au ga ggc  aguaagug gu  acg uucg      gcga  g
ag  -   -   C -                 Uc  u         -c      c   ca  g  g   ga        a  ag   a    ----aa    ua 

Annotation confidence High

Genome context

1: 6677570-6677766 [-]

Mature osa-miR319b-5p

• Accession: MIMAT0055950
• Description: Oryza sativa osa-miR319b-5p mature miRNA
• Sequence: 13 - AGAGCGUCCUUCAGUCCACUCA - 34
• Evidence: experimental ; unknown

Mature osa-miR319b-3p

• Accession: MIMAT0001029
• Description: Oryza sativa osa-miR319b-3p mature miRNA
• Sequence: 168 - UUGGACUGAAGGGUGCUCCCUC - 189
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799