Stem-loop osa-MIR319b

Accession

MI0001099

Description

Oryza sativa osa-MIR319b precursor miRNA

Gene family

MIPF0000010; MIR159

Literature search

51 open access papers mention osa-MIR319b
(262 sentences)

Sequence

321 reads, 227 reads per million, 2 experiments

gauggauggaagagagcguccuucaguccacucaugggcggugcuagggucgaauuagcugccgacucauucacccacaugccaagcaagaaacgcuugagauagcgaagcuuagcagaugagugaaugaagcgggagguaacguuccgaucucgcgccgucuuugcUUGGACUGAAGGGUGCUCCCuccuccucga
((.(((.(((.(.(((((((((((((((((..((.(((((((((..(((((((((((.((.(((..((((((((.((..(((.((((......((((......))))..)))).)))..)).))))))))..))).)).))..))).)))))).))))))))).))..)))))))))))))))))).))))))))..

Structure

--  u   u   a a                 cu  u         ua      -   --  g  g   ac        c  ca   c    aagaaa    ug 
  ga gga gga g gagcguccuucagucca  ca gggcggugc  gggucg aau  ua cu ccg  ucauucac ca  ugc aagc      cgcu  a
  || ||| ||| | |||||||||||||||||  || |||||||||  |||||| |||  || || |||  |||||||| ||  ||| ||||      ||||   
  cu ccu ccu C CUCGUGGGAAGUCAGGU  gu ucugccgcg  ucuagc uug  au ga ggc  aguaagug gu  acg uucg      gcga  g
ag  -   -   C -                 Uc  u         -c      c   ca  g  g   ga        a  ag   a    ----aa    ua 

Annotation confidence Not enough data

Genome context

Chr1: 6677570-6677766 [-]

Mature osa-miR319b

• Accession: MIMAT0001029
• Description: Oryza sativa osa-miR319b mature miRNA
• Sequence: 168 - UUGGACUGAAGGGUGCUCCC - 187
• Evidence: not_experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799