Stem-loop tae-MIR156

Accession

MI0016450

Description

Triticum aestivum tae-MIR156 precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

38 open access papers mention tae-MIR156
(322 sentences)

Sequence

77180 reads, 418 reads per million, 116 experiments

uccucucucucucucucucugcgugucgaccgucugcuguguccgaugggaucggucgggggcugcgguggaggguugaugauggugcgaauggcUGACAGAAGAGAGUGAGCACAcagcggcagacuacgucugguaaagaggacggauggaugcgaagagagauauagacgcagcugcuguugcgugcucacccucucucugucagcguuccgccaucaaucaaucuauccauccaucuccccuugccguucccaucgcuucgcagcucgacugcc
....................(((.(((((......((((((..((((((((.((((.(((((.((.(((((((((((((((((((((.(((((.((((((((((((.((((((((.(((((((((.((.((((((..........((........))..........)))))).))))))))))).)))))))).)))).)))))))))))))))))))).)))))))).))))))))...))))).)))).))))))))...)))))))))))))).

Structure

uccucucucucucucucucu   u     ccgucu      -uc        u    c     --c  c      -        -       c     g        -    A        A         a  a      guaaagagga  gau 
                    gcg gucga      gcugug   cgauggga cggu ggggg   ug ggugga ggguugau gauggug gaaug cUGACAGA AGAG GUGAGCAC cagcggcag cu cgucug          cg   g
                    ||| |||||      ||||||   |||||||| |||| |||||   || |||||| |||||||| ||||||| ||||| |||||||| |||| |||||||| ||||||||| || ||||||          ||    
                    cgu cagcu      cgacgc   gcuacccu gccg ucccc   ac cuaccu ucuaacua cuaccgc cuugc gacugucu ucuc cacucgug guugucguc ga gcagau          gc   g
-------------------c   -     ------      uuc        u    u     ucu  -      a        a       -     -        c    c        c         -  c      auagagagaa  gua 

Annotation confidence Not enough data

Genome context

Unknown

Mature tae-miR156

• Accession: MIMAT0018208
• Description: Triticum aestivum tae-miR156 mature miRNA
• Sequence: 96 - UGACAGAAGAGAGUGAGCACA - 116
• Evidence: not_experimental

References

1. PubMed ID: 18521122
   Data mining for miRNAs and their targets in the Triticeae
   "Dryanova A, Zakharov A, Gulick PJ"
   "Genome (2008) 51:433-443