Stem-loop tae-MIR156

Accession

MI0016450

Description

Triticum aestivum tae-MIR156 precursor miRNA

Literature search

63 open access papers mention tae-MIR156
(412 sentences)

Sequence

1134804 reads, 23337.0 reads per million, 235 experiments

uccucucucucucucucucugcgugucgaccgucugcuguguccgaugggaucggucgggggcugcgguggaggguugaugauggugcgaauggcUGACAGAAGAGAGUGAGCACAcagcggcagacuacgucugguaaagaggacggauggaugcgaagagagauauagacgcagcugcuguugcguGCUCACCCUCUCUCUGUCAGCguuccgccaucaaucaaucuauccauccaucuccccuugccguucccaucgcuucgcagcucgacugcc
....................(((.(((((......((((((..((((((((.((((.(((((.((.(((((((((((((((((((((.(((((.((((((((((((.((((((((.(((((((((.((.((((((..........((........))..........)))))).))))))))))).)))))))).)))).)))))))))))))))))))).)))))))).))))))))...))))).)))).))))))))...)))))))))))))).

Structure

uccucucucucucucucucu   u     ccgucu      -uc        u    c     --c  c      -        -       c     g        -    A        A         a  a      guaaagagga  gau 
                    gcg gucga      gcugug   cgauggga cggu ggggg   ug ggugga ggguugau gauggug gaaug cUGACAGA AGAG GUGAGCAC cagcggcag cu cgucug          cg   g
                    ||| |||||      ||||||   |||||||| |||| |||||   || |||||| |||||||| ||||||| ||||| |||||||| |||| |||||||| ||||||||| || ||||||          ||    
                    cgu cagcu      cgacgc   gcuacccu gccg ucccc   ac cuaccu ucuaacua cuaccgc cuugC GACUGUCU UCUC CACUCGug guugucguc ga gcagau          gc   g
-------------------c   -     ------      uuc        u    u     ucu  -      a        a       -     -        C    C        c         -  c      auagagagaa  gua 

Annotation confidence High

Genome context

Unknown

Mature tae-miR156-5p

• Accession: MIMAT0018208
• Description: Triticum aestivum tae-miR156-5p mature miRNA
• Sequence: 96 - UGACAGAAGAGAGUGAGCACA - 116
• Evidence: not_experimental

Mature tae-miR156-3p

• Accession: MIMAT0056497
• Description: Triticum aestivum tae-miR156-3p mature miRNA
• Sequence: 189 - GCUCACCCUCUCUCUGUCAGC - 209
• Evidence: experimental ; unknown

References

1. PubMed ID: 18521122
   Data mining for miRNAs and their targets in the Triticeae
   "Dryanova A, Zakharov A, Gulick PJ"
   "Genome (2008) 51:433-443