Stem-loop osa-MIR3981

Accession

MI0017256

Description

Oryza sativa osa-MIR3981 precursor miRNA

Literature search

3 open access papers mention osa-MIR3981
(5 sentences)

Sequence

80256 reads, 314.0 reads per million, 142 experiments

gaauauaauaacuuaaAAUCGAAUGGGACGUAUCCUAUUacuauaagucugauaagucuggauaugaggcaugucuAGAUUCGUAGUAUUAGGAUacgucucauccgguuuuagggugcuauauuc
(((((((.(..((((((((((.(((((((((((((((.((((((.(((((((((.((((.......)))).)))).))))).)))))).))))))))))))))).))))))))))..).)))))))

Structure

       a aa          A               U      a     -    a    gg 
gaauaua u  cuuaaAAUCG AUGGGACGUAUCCUA Uacuau agucu gaua gucu  a
||||||| |  |||||||||| ||||||||||||||| |||||| ||||| |||| ||||  u
cuuauau g  ggauuuuggc uacucugcaUAGGAU AUGAUG UUAGA cugu cgga  a
       c ug          c               U      C     u    a    gu 

Annotation confidence Low

Genome context

5: 4302813-4302938 [+]

Mature osa-miR3981-5p

• Accession: MIMAT0019683
• Description: Oryza sativa osa-miR3981-5p mature miRNA
• Sequence: 17 - AAUCGAAUGGGACGUAUCCUAUU - 39
• Evidence: experimental ; Illumina [1]

Mature osa-miR3981-3p

• Accession: MIMAT0019684
• Description: Oryza sativa osa-miR3981-3p mature miRNA
• Sequence: 77 - AGAUUCGUAGUAUUAGGAU - 95
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833