Stem-loop osa-MIR3981

Accession

MI0017256

Description

Oryza sativa osa-MIR3981 precursor miRNA

Literature search

3 open access papers mention osa-MIR3981
(5 sentences)

Sequence

166 reads, 126 reads per million, 2 experiments

gaauauaauaacuuaaaaucgaaUGGGACGUAUCCUAUUACUAUaagucugauaagucuggauaugaggcaugucuagauucguAGUAUUAGGAUACGUCUCAUCcgguuuuagggugcuauauuc
(((((((.(..((((((((((.(((((((((((((((.((((((.(((((((((.((((.......)))).)))).))))).)))))).))))))))))))))).))))))))))..).)))))))

Structure

       a aa          a               U      a     -    a    gg 
gaauaua u  cuuaaaaucg aUGGGACGUAUCCUA UACUAU agucu gaua gucu  a
||||||| |  |||||||||| ||||||||||||||| |||||| ||||| |||| ||||  u
cuuauau g  ggauuuuggc UACUCUGCAUAGGAU AUGAug uuaga cugu cgga  a
       c ug          C               U      c     u    a    gu 

Annotation confidence Not enough data

Genome context

Chr5: 4302813-4302938 [+]

Mature osa-miR3981-5p

• Accession: MIMAT0019683
• Description: Oryza sativa osa-miR3981-5p mature miRNA
• Sequence: 24 - UGGGACGUAUCCUAUUACUAU - 44
• Evidence: experimental ; Illumina [1]

Mature osa-miR3981-3p

• Accession: MIMAT0019684
• Description: Oryza sativa osa-miR3981-3p mature miRNA
• Sequence: 85 - AGUAUUAGGAUACGUCUCAUC - 105
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833