Stem-loop osa-MIR397b

Accession

MI0001050

Description

Oryza sativa osa-MIR397b precursor miRNA

Literature search

41 open access papers mention osa-MIR397b
(202 sentences)

Sequence

8862919 reads, 28825.0 reads per million, 142 experiments

agggaaggcauuaUUGAGUGCAGCGUUGAUGAACCUGccggccggcuaaauuaauuagcaagaaagucugaaacuggcucaaaggUUCACCAGCACUGCACCCAAUCacgccuuugcu
((.((((((...((((.((((((.((((.(((((((...((((((((((.....))))).(((...))).....)))))...))))))).)))).)))))).))))...)))))).))

Structure

  g      auu    A      C    A       Gcc     ---------------     a 
ag gaaggc   aUUG GUGCAG GUUG UGAACCU   ggccg               gcuaa u
|| ||||||   |||| |||||| |||| |||||||   |||||               ||||| u
uc uuuccg   UAAC CACGUC CGAC ACUUgga   ucggu               cgauu a
  g      caC    C      A    C       aac     caaagucugaaagaa     a 

Annotation confidence High

Comments

This sequence belongs to the miR397 family of miRNAs, which are predicted to target mRNAs coding for laccases and beta-6 tubulin [1].

Genome context

2: 3280781-3280898 [-]

Mature osa-miR397b-5p

• Accession: MIMAT0000981
• Description: Oryza sativa osa-miR397b-5p mature miRNA
• Sequence: 14 - UUGAGUGCAGCGUUGAUGAACCUG - 37
• Evidence: experimental ; Illumina [2]

Mature osa-miR397b-3p

• Accession: MIMAT0055932
• Description: Oryza sativa osa-miR397b-3p mature miRNA
• Sequence: 86 - UUCACCAGCACUGCACCCAAUC - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435