Stem-loop tae-MIR171a

Accession

MI0006175

Description

Triticum aestivum tae-MIR171a precursor miRNA

Literature search

19 open access papers mention tae-MIR171a
(66 sentences)

Sequence

35118 reads, 179 reads per million, 115 experiments

uggaauggucacuaugauguuggcucgacucacucagaccacgccugccggccggccguagccaugcaucugcaugcggugguggcucUGAUUGAGCCGUGCCAAUAUCucagugcucuuucaugcaugc
(((((.((.((((..(((((((((.((.((((.((((((((((((....)))..((((....(((((....))))))))).)))).))))).)))).)).)))))))))..)))))).))))).......

Structure

-------     u  u    au         u  a    c     -    gccugccggccg    uagc     a 
       uggaa gg cacu  gauguuggc cg cuca ucaga ccac            gccg    caugc u
       ||||| || ||||  ||||||||| || |||| ||||| ||||            ||||    |||||  
       acuuu uc guga  CUAUAACCG GC GAGU AGUcu ggug            uggc    guacg c
cguacgu     c  -    cu         U  C    U     c    -----------g    ----     u 

Annotation confidence High

Genome context

5A: 134091588-134091717 [-]

Mature tae-miR171a

• Accession: MIMAT0005348
• Description: Triticum aestivum tae-miR171a mature miRNA
• Sequence: 89 - UGAUUGAGCCGUGCCAAUAUC - 109
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96