Stem-loop tae-MIR171a

Accession

MI0006175

Description

Triticum aestivum tae-MIR171a precursor miRNA

Literature search

21 open access papers mention tae-MIR171a
(72 sentences)

Sequence

512770 reads, 4499.0 reads per million, 232 experiments

uggaauggucacuaugaUGUUGGCUCGACUCACUCAGAccacgccugccggccggccguagccaugcaucugcaugcggugguggcucUGAUUGAGCCGUGCCAAUAUCucagugcucuuucaugcaugc
(((((.((.((((..(((((((((.((.((((.((((((((((((....)))..((((....(((((....))))))))).)))).))))).)))).)).)))))))))..)))))).))))).......

Structure

-------     u  u    au         U  A    C     -    gccugccggccg    uagc     a 
       uggaa gg cacu  gaUGUUGGC CG CUCA UCAGA ccac            gccg    caugc u
       ||||| || ||||  ||||||||| || |||| ||||| ||||            ||||    |||||  
       acuuu uc guga  CUAUAACCG GC GAGU AGUcu ggug            uggc    guacg c
cguacgu     c  -    cu         U  C    U     c    -----------g    ----     u 

Annotation confidence High

Genome context

5A: 134091588-134091717 [-]

Mature tae-miR171a-5p

• Accession: MIMAT0061481
• Description: Triticum aestivum tae-miR171a-5p mature miRNA
• Sequence: 18 - UGUUGGCUCGACUCACUCAGA - 38
• Evidence: experimental ; unknown

Mature tae-miR171a-3p

• Accession: MIMAT0005348
• Description: Triticum aestivum tae-miR171a-3p mature miRNA
• Sequence: 89 - UGAUUGAGCCGUGCCAAUAUC - 109
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96