Stem-loop tae-MIR159a

Accession

MI0006170

Description

Triticum aestivum tae-MIR159a precursor miRNA

Literature search

36 open access papers mention tae-MIR159a
(243 sentences)

Sequence

101051366 reads, 363601.0 reads per million, 235 experiments

gugGAGCUCCUAUCAUUCCAAUGAagggucuaccgaaggguuugugcagcugcuuguucaugguucccacuauccuaucuccauuagaauacgaggagauaggcuugugguuugcaugaccgaggagccgcuucgaucccucgcugaccgcugUUUGGAUUGAAGGGAGCUCUGcau
(((((((((((.(((.(((((...((((((...(((.(((.(((.((.(((.((((.(((((....((((...(((((((((............)))))))))...))))....))))).)))).))).))..))).))))))..)))).))..))))).))).)))))))))))..

Structure

--           A   U     UGA  -    uac   a   u   -u  a   g    u     guuc    uau         auuag 
  gugGAGCUCCU UCA UCCAA   ag gguc   cga ggg uug  gc gcu cuug ucaug    ccac   ccuaucucc     a
  ||||||||||| ||| |||||   || ||||   ||| ||| |||  || ||| |||| |||||    ||||   |||||||||      
  cGUCUCGAGGG AGU AGGUU   uc ccag   gcu ccc agc  cg cga gagc aguac    ggug   ggauagagg     a
ua           A   U     -Ug  g    -uc   -   u   uu  c   g    c     guuu    uuc         agcau 

Annotation confidence High

Genome context

3D: 840138-840314 [-]

Mature tae-miR159a-5p

• Accession: MIMAT0061480
• Description: Triticum aestivum tae-miR159a-5p mature miRNA
• Sequence: 4 - GAGCUCCUAUCAUUCCAAUGA - 24
• Evidence: experimental ; unknown

Mature tae-miR159a-3p

• Accession: MIMAT0005343
• Description: Triticum aestivum tae-miR159a-3p mature miRNA
• Sequence: 154 - UUUGGAUUGAAGGGAGCUCUG - 174
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96