Stem-loop tae-MIR1120a

Accession

MI0006182

Description

Triticum aestivum tae-MIR1120a precursor miRNA

Literature search

12 open access papers mention tae-MIR1120a
(43 sentences)

Sequence

102908 reads, 1671.0 reads per million, 235 experiments

gcggccgcccgggcagguacucccUCCGUCCCAUAAUAUAAGAACauuuuugacaguguagugucaaaaacauucuuAUAUUAUGAGACGGAGGGAGUAuuucccagcuccugaaucac
.(((..((..(((.((((((((((((((((.(((((((((((((..(((((((((......)))))))))..))))))))))))).))))))))))))))))))).))..)))......

Structure

-----g   cc  cc   c                C             Ca         gu 
      cgg  gc  ggg agguacucccUCCGUC CAUAAUAUAAGAA  uuuuugaca  g
      |||  ||  ||| |||||||||||||||| |||||||||||||  |||||||||   
      guc  cg  ccc uuuAUGAGGGAGGCAG GUAUUAUAuucuu  aaaaacugu  u
cacuaa   cu  -a   -                A             ac         ga 

Annotation confidence Medium

Comments

Yao et al. misname this sequence miR504 in [1]. miR1120 is unrelated to mammalian miR-504;

Genome context

Unknown

Mature tae-miR1120a-5p

• Accession: MIMAT0056480
• Description: Triticum aestivum tae-miR1120a-5p mature miRNA
• Sequence: 25 - UCCGUCCCAUAAUAUAAGAAC - 45
• Evidence: experimental ; unknown

Mature tae-miR1120a-3p

• Accession: MIMAT0005355
• Description: Triticum aestivum tae-miR1120a-3p mature miRNA
• Sequence: 78 - AUAUUAUGAGACGGAGGGAGUA - 99
• Evidence: experimental ; cloned [1], RTPCR [1]

References

1. PubMed ID: 17543110
   Cloning and characterization of microRNAs from wheat (Triticum aestivum L.)
   Yao Y, Guo G, Ni Z, Sunkar R, Du J, Zhu JK, Sun Q
   Genome Biol (2007) 8:R96