miRBase entry: tae-MIR397

Stem-loop tae-MIR397


Accession
MI0030405
Description
Triticum aestivum tae-MIR397 precursor miRNA

Literature search
12 open access papers mention tae-MIR397
(33 sentences)

Sequence

70047 reads, 404 reads per million, 116 experiments
cgcaaaggugccauugagugcagcguugaugaaccguccuacuccuccgaggccggagcgguUCACCGGCGCUGCACACAAUGacggcucugc
.(((.((.((.(((((.(((((((((((.((((((((((..(((....)))...))).))))))).))))))))))).))))).)).)).)))

Structure
c   a  g  c     a           a       -   -ua   c 
 gca ag ug cauug gugcagcguug ugaaccg ucc   cuc u
 ||| || || ||||| ||||||||||| ||||||| |||   |||  
 cgu uc gc GUAAC CACGUCGCGGC ACUuggc agg   gag c
-   c  g  a     A           C       g   ccg   c 


Annotation confidence High
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Genome context
6A: 120354266-120354358 [-]

Database links

Mature tae-miR397-5p

Accession MIMAT0035795
Description Triticum aestivum tae-miR397-5p mature miRNA
Sequence 63 - UCACCGGCGCUGCACACAAUG - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24734873
    Identification and characterization of microRNAs in the flag leaf and developing seed of wheat (Triticum aestivum L.)
    Han R, Jian C, Lv J, Yan Y, Chi Q, Li Z, Wang Q, Zhang J, Liu X, Zhao H
    BMC Genomics (2014) 15:289