Stem-loop hvu-MIR159a

Accession

MI0016452

Description

Hordeum vulgare hvu-MIR159a precursor miRNA

Literature search

13 open access papers mention hvu-MIR159a
(80 sentences)

Sequence

gguggagcuccuaucauuccaaugaagggucuaccggaaggguuugugcagcugcuuguucaugguucccacuauccuaucuccauuagaacacgaggagauaggcuugugguuugcaugaucgaggagccgcuucgaucccucgcugaccgcugUUUGGAUUGAAGGGAGCUCUGca
.(((((((((((.(((.(((((...((((((...((..((((.(((.((.(((.((((.(((((....((((...(((((((((............)))))))))...))))....))))).)))).))).))..))).))))))..)))).))..))))).))).))))))))))).

Structure

g           a   u     uga  -    uac  ga    u   -u  a   g    u     guuc    uau         auuag 
 guggagcuccu uca uccaa   ag gguc   cg  aggg uug  gc gcu cuug ucaug    ccac   ccuaucucc     a
 ||||||||||| ||| |||||   || ||||   ||  |||| |||  || ||| |||| |||||    ||||   |||||||||      
 cGUCUCGAGGG AGU AGGUU   uc ccag   gc  uccc agc  cg cga gagc aguac    ggug   ggauagagg     a
a           A   U     -Ug  g    -uc  --    u   uu  c   g    u     guuu    uuc         agcac 

Annotation confidence Not enough data

Genome context

BACC01000259.1: 1889-2066 [+]

Mature hvu-miR159a

• Accession: MIMAT0018210
• Description: Hordeum vulgare hvu-miR159a mature miRNA
• Sequence: 156 - UUUGGAUUGAAGGGAGCUCUG - 176
• Evidence: not_experimental

References

1. PubMed ID: 18521122
   Data mining for miRNAs and their targets in the Triticeae
   "Dryanova A, Zakharov A, Gulick PJ"
   "Genome (2008) 51:433-443


2. PubMed ID: 20676715
   Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
   "Kantar M, Unver T, Budak H"
   "Funct Integr Genomics (2010) 10:493-507


3. PubMed ID: 23324356
   Developmentally regulated expression and complex processing of barley pri-microRNAs
   Kruszka K, Pacak A, Swida-Barteczka A, Stefaniak AK, Kaja E, Sierocka I, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z
   BMC Genomics (2013) 14:34