Stem-loop hvu-MIR171

Accession

MI0016461

Description

Hordeum vulgare hvu-MIR171 precursor miRNA

Literature search

8 open access papers mention hvu-MIR171
(90 sentences)

Sequence

gcggguugauggccaggaacuccgacaagaggaggaugcugaaacggucacuaugaUGUUGGCUCGACUCACUCAGAccacgccggagggagccaucugcggcggcgguucUGAUUGAGCCGUGCCAAUAUCuuagugcucuuucaugcucgucccuugucgccaucacccac
..((((.((((((..((....))((((((.(((.((.(((((((.((.(((((.(((((((((.((.((((.(((((((.(((((.(((......))).)))))..)).))))).)))).)).))))))))).))))))).))))).)))).)))))))))))))))))))..

Structure

gc    u      caggaacucc      a   g  u  -     c  u     u         U  A    C     -  -a     g   ga 
  gggu gauggc          gacaag gga ga gc ugaaa gg cacua gaUGUUGGC CG CUCA UCAGA cc  cgccg agg  g
  |||| ||||||          |||||| ||| || || ||||| || ||||| ||||||||| || |||| ||||| ||  ||||| |||   
  ccca cuaccg          cuguuc ccu cu cg acuuu uc gugau CUAUAACCG GC GAGU AGUcu gg  gcggc ucu  c
ca    -      ----------      -   g  -  u     c  -     u         U  C    U     u  cg     g   ac 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR171-3p

• Accession: MIMAT0018220
• Description: Hordeum vulgare hvu-miR171-3p mature miRNA
• Sequence: 112 - UGAUUGAGCCGUGCCAAUAUC - 132
• Evidence: experimental ; Illumina [3], Northern [5]

Mature hvu-miR171-5p

• Accession: MIMAT0022971
• Description: Hordeum vulgare hvu-miR171-5p mature miRNA
• Sequence: 57 - UGUUGGCUCGACUCACUCAGA - 77
• Evidence: experimental ; Illumina [4], Northern [5]

References

1. PubMed ID: 18521122
   Data mining for miRNAs and their targets in the Triticeae
   "Dryanova A, Zakharov A, Gulick PJ"
   "Genome (2008) 51:433-443


2. PubMed ID: 20676715
   Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
   "Kantar M, Unver T, Budak H"
   "Funct Integr Genomics (2010) 10:493-507


3. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129


4. PubMed ID: 22489137
   Identification and characterization of microRNAs from barley (Hordeum vulgare L.) by high-throughput sequencing
   Lv S, Nie X, Wang L, Du X, Biradar SS, Jia X, Weining S
   Int J Mol Sci (2012) 13:2973-2984


5. PubMed ID: 23324356
   Developmentally regulated expression and complex processing of barley pri-microRNAs
   Kruszka K, Pacak A, Swida-Barteczka A, Stefaniak AK, Kaja E, Sierocka I, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z
   BMC Genomics (2013) 14:34