Stem-loop osa-MIR171d

Accession

MI0001135

Description

Oryza sativa osa-MIR171d precursor miRNA

Literature search

44 open access papers mention osa-MIR171d
(146 sentences)

Sequence

521 reads, 359 reads per million, 2 experiments

uuguagcuaugaUGUUGGCCCGGCUCACUCAGAuggaucaucggugcagaagagugcaugaaucugaugcagucucaguguaguaugcuccaugcuggaacuucUGAUUGAGCCGUGCCAAUAUCucagcaccau
.....(((..(((((((((.(((((((.(((((((((.(((.(.((((..(((.(((((.......))))).)))...)))).)))).))))..........))))).))))))).)))))))))..))).....

Structure

uugua   au         C       C     ----------    u   c g    -ga   g     ga 
     gcu  gaUGUUGGC CGGCUCA UCAGA          ugga cau g ugca   aga ugcau  a
     |||  ||||||||| ||||||| |||||          |||| ||| | ||||   ||| |||||  u
     cga  CUAUAACCG GCCGAGU AGUcu          accu gua u augu   ucu acgua  c
uacca   cu         U       U     ucaaggucgu    c   - g    gac   g     gu 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors.

Genome context

Chr10: 21237313-21237447 [+]

Mature osa-miR171d-3p

• Accession: MIMAT0001065
• Description: Oryza sativa osa-miR171d-3p mature miRNA
• Sequence: 105 - UGAUUGAGCCGUGCCAAUAUC - 125
• Evidence: not_experimental

Mature osa-miR171d-5p

• Accession: MIMAT0022878
• Description: Oryza sativa osa-miR171d-5p mature miRNA
• Sequence: 13 - UGUUGGCCCGGCUCACUCAGA - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176