miRBase entry: hvu-MIR166a

Stem-loop hvu-MIR166a


Accession
MI0016455
Description
Hordeum vulgare hvu-MIR166a precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
8 open access papers mention hvu-MIR166a
(44 sentences)

Sequence

caugguugucgaggggaaugacnccggguccnaaagagagacncucgcauggcgugcgcguggugcguuUCGGACCAGGCUUCAUUCCCCaugacuccau
.((((..((((.(((((((((..((.(((((......(((((....((((.(((....))).)))))))))))))).))..))))))))).)))).))))

Structure
c    uu    a         cn  g     naaaga     ncuc    g   u 
 augg  gucg ggggaauga  cc ggucc      gagac    gcau gcg g
 ||||  |||| |||||||||  || |||||      |||||    |||| |||  
 uacc  cagu CCCCUUACU  GG CCAGG      CUuug    cgug ugc c
-    -u    a         UC  A     ------     ----    g   g 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature hvu-miR166a

Accession MIMAT0018213
Description Hordeum vulgare hvu-miR166a mature miRNA
Sequence 70 - UCGGACCAGGCUUCAUUCCCC - 90
Evidence not_experimental

References

  1. PubMed ID: 18521122
    Data mining for miRNAs and their targets in the Triticeae
    "Dryanova A, Zakharov A, Gulick PJ"
    "Genome (2008) 51:433-443

  2. PubMed ID: 23324356
    Developmentally regulated expression and complex processing of barley pri-microRNAs
    Kruszka K, Pacak A, Swida-Barteczka A, Stefaniak AK, Kaja E, Sierocka I, Karlowski W, Jarmolowski A, Szweykowska-Kulinska Z
    BMC Genomics (2013) 14:34