miRBase entry: gma-MIR1520e

Stem-loop gma-MIR1520e


Accession
MI0016484
Description
Glycine max gma-MIR1520e precursor miRNA
Gene family
MIPF0000581; MIR1520

Literature search
2 open access papers mention gma-MIR1520e
(2 sentences)

Sequence

uaacugucacguaucacguucugauuggaugaugacugucacaugucauauucuaauuggucaaugaaaacagcaaugcauuucaucuuucauggaguugacauccaaucagaacaugacacgugacagucgucaucCAAUAAGAACGUGACAUAUGACAGuca
..(((((((.((.(((((((((.(((((((((((((((((((.((((((.((((.(((((...(((..(((..((.((.(........).))))..)))..)))))))).)))).)))))).))))))))))))))))))).))))))))).)).)))))))..

Structure
ua       c  a         g                   a      a    a     uca   aa   ag  a  c uuu 
  acuguca gu ucacguucu auuggaugaugacugucac ugucau uucu auugg   aug  aac  ca ug a   c
  ||||||| || ||||||||| ||||||||||||||||||| |||||| |||| |||||   |||  |||  || || |    
  uGACAGU UA AGUGCAAGA UAACcuacugcugacagug acagua aaga uaacc   uac  uug  gu ac u   a
ac       A  C         A                   c      c    c     ---   ag   ag  -  u ucu 


Annotation confidence Not enough data
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Genome context
chr17: 17845222-17845385 [-]

Database links

Mature gma-miR1520e

Accession MIMAT0018243
Description Glycine max gma-miR1520e mature miRNA
Sequence 138 - CAAUAAGAACGUGACAUAUGACAG - 161
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14