Stem-loop gma-MIR1520f

Accession

MI0016485

Description

Glycine max gma-MIR1520f precursor miRNA

Literature search

2 open access papers mention gma-MIR1520f
(2 sentences)

Sequence

53957 reads, 181.0 reads per million, 178 experiments

uucuuacuaaaugacgauuguCACGUGUCAUGUUCUGAUUacaugaaagaugaaaugcauuguuauuuucauuGACCAAUCAGAACAUGACACAugacaauca
...............((((((((.(((((((((((((((....((...(((((((...........)))))))...))))))))))))))))).)))))))).

Structure

uucuuacuaaaugac        C               Uaca  aaa       ugca 
               gauuguCA GUGUCAUGUUCUGAU    ug   gaugaaa    u
               |||||||| |||||||||||||||    ||   |||||||    u
               cuaacagu CACAGUACAAGACUA    AC   uuacuuu    g
--------------a        A               ----  CAG       uauu 

Annotation confidence Low

Genome context

chr2: 17814168-17814270 [-]

Mature gma-miR1520f-5p

• Accession: MIMAT0032111
• Description: Glycine max gma-miR1520f-5p mature miRNA
• Sequence: 22 - CACGUGUCAUGUUCUGAUU - 40
• Evidence: experimental ; Illumina [2]

Mature gma-miR1520f-3p

• Accession: MIMAT0018244
• Description: Glycine max gma-miR1520f-3p mature miRNA
• Sequence: 74 - GACCAAUCAGAACAUGACACA - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 24475082
   Systems and evolutionary characterization of microRNAs and their underlying regulatory networks in soybean cotyledons
   Goettel W, Liu Z, Xia J, Zhang W, Zhao PX, An YQ
   PLoS One (2014) 9:e86153