miRBase entry: gma-MIR4387c

Stem-loop gma-MIR4387c


Accession
MI0016495
Description
Glycine max gma-MIR4387c precursor miRNA
Gene family
MIPF0001109; MIR4387

Literature search
1 open access papers mention gma-MIR4387c
(1 sentences)

Sequence

cauuaaaugaugaugugacaguuggagugucacgucaucacgccuugugguggacauaucaucaccuuuaaugacguguuagugauuaAGCGUGAUGACGUGACACUCCGUCuaucacgucaucacuuaaug
((((((.(((((((((((.((.(((((((((((((((((((((...(((((((.....)))))))..(((((.((......)).)))))))))))))))))))))))))).)).))))))))))).))))))

Structure
      a           c  u                     cuugugguggacauaucaucaccu     g  gu 
cauuaa ugaugauguga ag uggagugucacgucaucacgc                        uuaau ac  g
|||||| ||||||||||| || |||||||||||||||||||||                        ||||| ||   
guaauu acuacugcacu uC GCCUCACAGUGCAGUAGUGCG                        Aauua ug  u
      c           a  U                     ------------------------     g  au 


Annotation confidence Not enough data
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Genome context
chr7: 16521619-16521750 [+]

Database links

Mature gma-miR4387c

Accession MIMAT0018254
Description Glycine max gma-miR4387c mature miRNA
Sequence 89 - AGCGUGAUGACGUGACACUCCGUC - 112
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14