miRBase entry: gma-MIR1520i

Stem-loop gma-MIR1520i


Accession
MI0016498
Description
Glycine max gma-MIR1520i precursor miRNA
Gene family
MIPF0000581; MIR1520

Literature search
2 open access papers mention gma-MIR1520i
(2 sentences)

Sequence

uaauguugacuaucacgugucacguucuuauuggauuaugacugucacgugucauguucugauuggucaaugaaaauaacaauacauuuaaucuuuuauggaguugacauucaaucaaAACGUGACACGUGACGGUCAACAUca
.(((((.(((........)))))))).......(((..((((((((((((((((((((.((((((((((((....((((................))))...))))))...)))))).))))))))))))))))))))..))).

Structure
uaauguugacuaucacgugucacguucuuauug   ua                    c      ---      gaaa    caauaca 
                                 gau  ugacugucacgugucauguu ugauug   gucaau    auaa       u
                                 |||  |||||||||||||||||||| ||||||   ||||||    ||||        
                                 cUA  ACUGGCAGUGCACAGUGCAA acuaac   caguug    uauu       u
--------------------------------a   CA                    a      uua      -agg    uucuaau 


Annotation confidence Not enough data
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Genome context
chr3: 34949369-34949512 [-]

Database links

Mature gma-miR1520i

Accession MIMAT0018257
Description Glycine max gma-miR1520i mature miRNA
Sequence 119 - AACGUGACACGUGACGGUCAACAU - 142
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14