miRBase entry: gma-MIR396d

Stem-loop gma-MIR396d


Accession
MI0016503
Description
Glycine max gma-MIR396d precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
25 open access papers mention gma-MIR396d
(153 sentences)

Sequence

ggucaugcuuuuccacagcuuucuugaacuucuuaugcaucuuauaucucuccacuuccagcauuuuaagcccuagaagcucAAGAAAGCUGUGGGAGAAUAUGGCaa
.((((((.(((((((((((((((((((.(((((...((...............................))...))))).))))))))))))))))))).))))))..

Structure
-g      c                   a     uau  aucuuauaucucuc 
  gucaug uuuuccacagcuuucuuga cuucu   gc              c
  |||||| ||||||||||||||||||| |||||   ||              a
  CGGUAU AGAGGGUGUCGAAAGAAcu gaaga   cg              c
aa      A                   c     ucc  aauuuuacgaccuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr17: 8782240-8782347 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR396d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR396d

Accession MIMAT0018262
Description Glycine max gma-miR396d mature miRNA
Sequence 83 - AAGAAAGCUGUGGGAGAAUAUGGC - 106
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14