Stem-loop sequence gma-MIR396d

Accession

MI0016503 (change log)

Description

Glycine max miR396d stem-loop

Gene family

MIPF0000047; MIR396

Literature search

25 open access papers mention gma-MIR396d
(148 sentences)

Stem-loop

   -g      c                   a     uau  aucuuauaucucuc 
5'   gucaug uuuuccacagcuuucuuga cuucu   gc              c
     |||||| ||||||||||||||||||| |||||   ||              a
3'   cgguau agagggugucgaaagaacu gaaga   cg              c
   aa      a                   c     ucc  aauuuuacgaccuu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr17: 8782240-8782347 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR396d

• gma-MIR396d: chr17: 8782240-8782347 [-]
• gma-MIR396i: chr17: 8774041-8774175 [+]

Database links

• miRBase Tracker:MI0016503

Mature sequence gma-miR396d

• Accession: MIMAT0018262
• Sequence: 83 - aagaaagcugugggagaauauggc - 106
• Evidence: experimental; Illumina [1]

References

1. PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max" Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G BMC Bioinformatics. 11 Suppl 1:S14(2010).