Stem-loop gma-MIR1520m

Accession

MI0016534

Description

Glycine max gma-MIR1520m precursor miRNA

Gene family

MIPF0000581; MIR1520

Literature search

2 open access papers mention gma-MIR1520m
(2 sentences)

Sequence

uucuuauuggaugaugacuguuacgugccauguucugauuggaugucaacuccauaaaagaugaaaugaauuguuguuuucauuuaucAAUCAGAACAUGACAUGUGACAAUuaucauucaauaagaa
.((((((((((((((((.(((((((((.(((((((((((((((.......)))......((((((.((((........)))))))))))))))))))))).))))))))).)))))))))))))))).

Structure

u                c         c            ggaugucaacuccauaaaa      a    uug 
 ucuuauuggaugauga uguuacgug cauguucugauu                   gaugaa ugaa   u
 |||||||||||||||| ||||||||| ||||||||||||                   |||||| ||||    
 agaauaacuuacuauU ACAGUGUAC GUACAAGACUAA                   cuauuu acuu   u
a                A         A            -------------------      -    uug 

Annotation confidence Not enough data

Genome context

chr4: 9565785-9565912 [-]

Mature gma-miR1520m

• Accession: MIMAT0018293
• Description: Glycine max gma-miR1520m mature miRNA
• Sequence: 89 - AAUCAGAACAUGACAUGUGACAAU - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14