Stem-loop gma-MIR1520r

Accession

MI0016554

Description

Glycine max gma-MIR1520r precursor miRNA

Gene family

MIPF0000581; MIR1520

Literature search

3 open access papers mention gma-MIR1520r
(3 sentences)

Sequence

acauugacugucacgUGUCACAUCCUGGUUGGACAUGAAaagaugcguccaagaauccauuauaacauuuuucuauucauuguccgaucagaacaugacaugugaccgucaaugu
((((((((.(((((((((((....(((((((((((((((.(((............................))).)))).)))))))))))....))))))))))).))))))))

Structure

        u           CAUC           -    a   ugcguccaagaau 
acauugac gucacgUGUCA    CUGGUUGGACA UGAA aga             c
|||||||| |||||||||||    ||||||||||| |||| |||              
uguaacug caguguacagu    gacuagccugu acuu ucu             c
        c           acaa           u    a   uuuuacaauauua 

Annotation confidence Not enough data

Genome context

chr19: 49004957-49005071 [-]

Mature gma-miR1520r

• Accession: MIMAT0018313
• Description: Glycine max gma-miR1520r mature miRNA
• Sequence: 16 - UGUCACAUCCUGGUUGGACAUGAA - 39
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14