miRBase entry: gma-MIR4409

Stem-loop gma-MIR4409


Accession
MI0016569
Description
Glycine max gma-MIR4409 precursor miRNA

Literature search
1 open access papers mention gma-MIR4409
(1 sentences)

Sequence

uccauuagaaUAACAAGUGGGUUUGUUGACUGaaauaguugaaaaaccuaauguuauuacu
........(((((((..(((((((.(((((((...))))))).))))))).)))))))...

Structure
uccauuag       AG       G       a 
        aaUAACA  UGGGUUU UUGACUG  
        |||||||  ||||||| ||||||| a
        uuauugu  auccaaa aguugau  
-----uca       -a       a       a 


Annotation confidence Not enough data
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Genome context
chr16: 5771195-5771255 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR4409
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR4409

Accession MIMAT0018328
Description Glycine max gma-miR4409 mature miRNA
Sequence 11 - UAACAAGUGGGUUUGUUGACUG - 32
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14