miRBase entry: gma-MIR169d

Stem-loop gma-MIR169d


Accession
MI0016571
Description
Glycine max gma-MIR169d precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
24 open access papers mention gma-MIR169d
(114 sentences)

Sequence

agauuaguggaugUGAGCCAAGGAUGACUUGCCGGUuguauaauagcacccgguuuaaguccuucuugguucuuauuuacuauucuua
(((.(((((((((.((((((((((.((((((((((.(((......))).)))))..))))).)))))))))).))))))))).)))..

Structure
--   u         U          U     --     U   au 
  aga uaguggaug GAGCCAAGGA GACUU  GCCGG ugu  a
  ||| ||||||||| |||||||||| |||||  ||||| |||   
  ucu aucauuuau cuugguucuu cugaa  uggcc acg  a
au   u         u          c     uu     c   au 


Annotation confidence Not enough data
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Genome context
chr15: 14186946-14187033 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR169d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR169d

Accession MIMAT0018330
Description Glycine max gma-miR169d mature miRNA
Sequence 14 - UGAGCCAAGGAUGACUUGCCGGU - 36
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14