Stem-loop gma-MIR171c

Accession

MI0016575

Description

Glycine max gma-MIR171c precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

16 open access papers mention gma-MIR171c
(42 sentences)

Sequence

uuaagaacuugAGAUAUUGGUGCGGUUCAAUCagaaggcaguguuuuaugauccaaaagcucuguguuauuugaUUGAGCCGUGCCAAUAUCACAuguuauuga
((((.(((.((.((((((((((((((((((((((((.((((.(((((........))))).)))).)..))))))))))))))))))))))).)).))).))))

Structure

    g   u  A                       -- g    u     aug 
uuaa aac ug GAUAUUGGUGCGGUUCAAUCaga  a gcag guuuu   a
|||| ||| || |||||||||||||||||||||||  | |||| |||||    
aguu uug AC CUAUAACCGUGCCGAGUUaguuu  u uguc cgaaa   u
    a   u  A                       au g    u     acc 

Annotation confidence Not enough data

Genome context

chr7: 43625963-43626066 [-]

Mature gma-miR171c-5p

• Accession: MIMAT0018334
• Description: Glycine max gma-miR171c-5p mature miRNA
• Sequence: 12 - AGAUAUUGGUGCGGUUCAAUC - 32
• Evidence: experimental ; Illumina [1]

Mature gma-miR171c-3p

• Accession: MIMAT0022972
• Description: Glycine max gma-miR171c-3p mature miRNA
• Sequence: 75 - UUGAGCCGUGCCAAUAUCACA - 95
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20122185
   Prediction of novel miRNAs and associated target genes in Glycine max
   Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
   BMC Bioinformatics (2010) 11:S14


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553