Stem-loop sequence gma-MIR169e

Accession

MI0016576 (change log)

Description

Glycine max miR169e stem-loop

Gene family

MIPF0001058; MIR169_6

Literature search

23 open access papers mention gma-MIR169e
(101 sentences)

Stem-loop

         c    a a  u         gcuuu     c       a     c    uaauu 
5' gucuug auga g gg agagagagu     ugagc aaggaug cuugc ggcg     a
   |||||| |||| | || |||||||||     ||||| ||||||| ||||| ||||     c
3' cagaau uacu c cu uuucucucg     acuug uuccuac gagcg ccgu     g
         a    - a  -         uauuc     -       a     a    uaugg 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr15: 14210033-14210152 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0016576

Mature sequence gma-miR169e

• Accession: MIMAT0018335
• Sequence: 34 - agccaaggaugacuugccgg - 53
• Evidence: experimental; Illumina [1]

References

1. PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max" Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G BMC Bioinformatics. 11 Suppl 1:S14(2010).