miRBase entry: gma-MIR169e

Stem-loop gma-MIR169e


Accession
MI0016576
Description
Glycine max gma-MIR169e precursor miRNA
Gene family
MIPF0001058; MIR169_6

Literature search
23 open access papers mention gma-MIR169e
(105 sentences)

Sequence

gucuugcaugaagagguagagagagugcuuuugAGCCAAGGAUGACUUGCCGGcguaauuacggguauugccagcgagacauccuuguucacuuaugcucucuuuucacucauauaagac
((((((.((((.(.((.(((((((((.....(((((.(((((((.(((((.((((.............)))).))))).)))))))))))).....))))))))))).))))).))))))

Structure
      c    a a  u         gcuuu     C       A     C    uaauu 
gucuug auga g gg agagagagu     ugAGC AAGGAUG CUUGC GGcg     a
|||||| |||| | || |||||||||     ||||| ||||||| ||||| ||||     c
cagaau uacu c cu uuucucucg     acuug uuccuac gagcg ccgu     g
      a    - a  -         uauuc     -       a     a    uaugg 


Annotation confidence Not enough data
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Genome context
chr15: 14210033-14210152 [+]

Database links

Mature gma-miR169e

Accession MIMAT0018335
Description Glycine max gma-miR169e mature miRNA
Sequence 34 - AGCCAAGGAUGACUUGCCGG - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14