miRBase entry: gma-MIR394a

Stem-loop gma-MIR394a


Accession
MI0016582
Description
Glycine max gma-MIR394a precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
12 open access papers mention gma-MIR394a
(25 sentences)

Sequence

aucaugaggguuuagcaaaguguugcuaacagaguuuaUUGGCAUUCUGUCCACCUCCacuuccuacucucucucucucucucucuacccaugaauauggaggugggcauacugucaacugAGCUCUGUUGGCUACACUUUguaaagccuucaugau
(((((((((((((.(((((((((.((((((((((((((((((((...((((((((((((.(((.............................)))..))))))))))))...)))))).)))))))))))))).))))))))).)))))))))))))

Structure
             a         u              -      UUC            -c   cuacucucucucu 
aucaugaggguuu gcaaagugu gcuaacagaguuua UUGGCA   UGUCCACCUCCa  uuc             c
||||||||||||| ||||||||| |||||||||||||| ||||||   ||||||||||||  |||             u
uaguacuuccgaa ugUUUCACA CGGUUGUCUCGAgu aacugu   acggguggaggu  aag             c
             a         U              c      cau            au   uacccaucucucu 


Annotation confidence Not enough data
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Genome context
chr17: 41517111-41517267 [+]

Database links

Mature gma-miR394a-3p

Accession MIMAT0018341
Description Glycine max gma-miR394a-3p mature miRNA
Sequence 122 - AGCUCUGUUGGCUACACUUU - 141
Evidence experimental
Illumina [1-2]

Mature gma-miR394a-5p

Accession MIMAT0022974
Description Glycine max gma-miR394a-5p mature miRNA
Sequence 39 - UUGGCAUUCUGUCCACCUCC - 58
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20122185
    Prediction of novel miRNAs and associated target genes in Glycine max
    Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G
    BMC Bioinformatics (2010) 11:S14

  2. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553