Accession
MI0016621
Description
Sus scrofa
ssc-mir-199a-1 precursor miRNA
Gene family
MIPF0000040;
mir-199
Literature search
18 open access papers mention ssc-mir-199a-1
(106 sentences)
(106 sentences)
Sequence
3786
reads,
1123
reads per million, 15 experiments
uccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguACAGUAGUCUGCACAUUGGUUAgacuggg
.(((((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)).
.(((((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).)).
Structure
u - gcC U C U -- ac cc guc CCAGUGU CAGACUAC UGU Ca gg a || ||| ||||||| |||||||| ||| || || gg cag GGUUACA GUCUGAUG ACA gu cc a g u AUU C - u ug gu
Annotation confidence
High
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Genome context
chr9: 126105251-126105326 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ssc-mir-199a-1
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ssc-miR-199a-5p
| Accession | MIMAT0013874 |
| Description | Sus scrofa ssc-miR-199a-5p mature miRNA |
| Sequence | 9 - CCCAGUGUUCAGACUACCUGUUC - 31 |
| Evidence |
experimental
cloned [1], Illumina [2-3] |
Mature ssc-miR-199a-3p
| Accession | MIMAT0013875 |
| Description | Sus scrofa ssc-miR-199a-3p mature miRNA |
| Sequence | 48 - ACAGUAGUCUGCACAUUGGUUA - 69 |
| Evidence |
experimental
cloned [1], Illumina [2-4] |
References
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