Stem-loop hvu-MIR444a

Accession

MI0016745

Description

Hordeum vulgare hvu-MIR444a precursor miRNA

Gene family

MIPF0000402; MIR444

Literature search

7 open access papers mention hvu-MIR444a
(19 sentences)

Sequence

aggcacaaguaggacaccaacauuaccugcaagcaagacgcaaaauuaauagaacaucaccauacuuguggcuuucuugcaagucgugcagUUGCUGCCUCAAGCUUGCUGCcu
(((((((((((((.((.((((((.((.((((((.(((.(((((......................))))).))).)))))).)).))...)))).)))))...))))).)))))

Structure

     -     ---   a  c    ---  u  c      c   a     aauuaauaga 
aggca caagu   agg ca caac   au ac ugcaag aag cgcaa          a
||||| |||||   ||| || ||||   || || |||||| ||| |||||           
ucCGU GUUCG   UCC GU GUUg   ug ug acguuc uuc guguu          c
     C     AAC   -  C    acg  c  a      u   g     cauaccacua 

Annotation confidence Not enough data

Genome context

Unknown

Mature hvu-miR444a

• Accession: MIMAT0018503
• Description: Hordeum vulgare hvu-miR444a mature miRNA
• Sequence: 92 - UUGCUGCCUCAAGCUUGCUGC - 112
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20676715
   Regulation of barley miRNAs upon dehydration stress correlated with target gene expression
   "Kantar M, Unver T, Budak H"
   "Funct Integr Genomics (2010) 10:493-507


2. PubMed ID: 21352554
   Discovery of barley miRNAs through deep sequencing of short reads
   Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U
   BMC Genomics (2011) 12:129