miRBase entry: hsa-mir-548ae-1

Stem-loop hsa-mir-548ae-1


Accession
MI0016779
Symbol
HGNC: MIR548AE1
Description
Homo sapiens hsa-mir-548ae-1 precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
56 open access papers mention hsa-mir-548ae-1
(170 sentences)

Sequence

926 reads, 40 reads per million, 43 experiments
gcaguuuuugccauuaaguugcgguuuuugccauuauaauggCAAAAACUGCAAUUACUUUCAcaccugc
(((((((((((((((((((.(((.....))).))).))))))))))))))))..................

Structure
------------------                -   u   g 
                  gcaguuuuugccauua agu gcg u
                  |||||||||||||||| ||| ||| u
                  CGUCAAAAACgguaau uua cgu u
cguccacACUUUCAUUAA                a   c   u 


Annotation confidence Not enough data
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Genome context
chr2: 184378975-184379044 [+]

Database links

Mature hsa-miR-548ae-3p

Accession MIMAT0018954
Description Homo sapiens hsa-miR-548ae-3p mature miRNA
Sequence 43 - CAAAAACUGCAAUUACUUUCA - 63
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20733160
    Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs
    "Jima DD, Zhang J, Jacobs C, Richards KL, Dunphy CH, Choi WW, Au WY, Srivastava G, Czader MB, Rizzieri DA, Lagoo AS, Lugar PL, Mann KP, Flowers CR, Bernal-Mizrachi L, Naresh KN, Evens AM, Gordon LI, Luftig M, Friedman DR, Weinberg JB, Thompson MA, Gill JI,"
    "Blood (2010) 116:e118-e127