Stem-loop cgr-mir-7a

Accession

MI0016998

Description

Cricetulus griseus cgr-mir-7a precursor miRNA

Gene family

MIPF0000022; mir-7

Literature search

1 open access papers mention cgr-mir-7a
(5 sentences)

Sequence

162247 reads, 2222 reads per million, 6 experiments

ggugguggccaaggcccagaggaggugguuagcaaggccauggacaggccagccccgccUGGAAGACUAGUGAUUUUGUUGUugucucucuauacucaacaacaagucccagucuaccacacggugcggguccucugagcaucagggggagguaugggagcaccauuucuggauguauuuucucugccuucuauguucccuagcaaacuaccaaaauauuccuc
....(.(((....)))).((((((((((((.((.(((.((((((.((((..(((((((((((.(((((.(.(((((.(((((((............))))))))))))).))))).)))...)))).))))(((((((...))))))).(((.((((.....)))).)))(((......)))...))))))))))...))).)).))))))).......)))))

Structure

ggugguggccaaggccca     -------       a  a   --c      c    ----------------------------------------------------ca    -    ---   A     A U     U       ucucu 
                  gagga       ggugguu gc agg   caugga aggc                                                      gccc cgcc   UGG AGACU G GAUUU GUUGUug     c
                  |||||       ||||||| || |||   |||||| ||||                                                      |||| ||||   ||| ||||| | ||||| |||||||      
                  cuccu       ccaucaa cg ucc   guaucu uccg                                                      uggg gugg   acc ucuga c cugaa caacaac     u
------------------     uauaaaa       a  a   cuu      -    ucucuuuuauguaggucuuuaccacgaggguauggagggggacuacgagucucc    c    cac   a     c -     -       ucaua 

Annotation confidence Not enough data

Genome context

JH002901.1: 118788-119011 [+]

Mature cgr-miR-7a

• Accession: MIMAT0020368
• Description: Cricetulus griseus cgr-miR-7a mature miRNA
• Sequence: 60 - UGGAAGACUAGUGAUUUUGUUGU - 82
• Evidence: experimental ; RTPCR [1], Illumina [2]

References

1. PubMed ID: 21167223
   Engineering CHO cell growth and recombinant protein productivity by overexpression of miR-7
   "Barron N, Kumar N, Sanchez N, Doolan P, Clarke C, Meleady P, O'Sullivan F, Clynes M"
   "J Biotechnol (2011) 151:204-211


2. PubMed ID: 21392545
   Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
   "Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J"
   "J Biotechnol (2011) 153:62-75