Stem-loop osa-MIR3980a

Accession

MI0017252

Description

Oryza sativa osa-MIR3980a precursor miRNA

Gene family

MIPF0001268; MIR3980

Literature search

5 open access papers mention osa-MIR3980a
(11 sentences)

Sequence

214 reads, 166 reads per million, 2 experiments

gcggcgucuuccucuucuuccccuuaggagAAUCGACGGCCUCAGUCAGGGgcgccuuccccuugagcucgggagacgcauucugcuuuggcugggggcgcaggcuccggcgggcccuugucgucaccggaauuagacacuucgucCUGGCCGAGGCCGUCGAUUCUccuagcgggaagaggaagacgccgc
(((((((((((((((...((((.((((((((((((((((((((.(((((((..((((.(((((..((((.((.(((.....))).))..)))))))))...))))(((((..(((.......))).))))).............))))))).)))))))))))))))))))).)))))))))))))))))))

Structure

               ucu    c                    A       -------------------------------------gc    --u     ug    -c  g   c 
gcggcgucuuccucu   uccc uuaggagAAUCGACGGCCUC GUCAGGG                                       gccu   ccccu  agcu  gg aga g
|||||||||||||||   |||| |||||||||||||||||||| |||||||                                       ||||   |||||  ||||  || ||| c
cgccgcagaaggaga   aggg gauccUCUUAGCUGCCGGAG CGGUCcu                                       cgga   ggggg  ucgg  uc ucu a
               ---    c                    C       gcuucacagauuaaggccacugcuguucccgggcggccu    cgc     --    uu  g   u 

Annotation confidence High

Genome context

Unknown

Mature osa-miR3980a-5p

• Accession: MIMAT0019675
• Description: Oryza sativa osa-miR3980a-5p mature miRNA
• Sequence: 31 - AAUCGACGGCCUCAGUCAGGG - 51
• Evidence: experimental ; Illumina [1]

Mature osa-miR3980a-3p

• Accession: MIMAT0019676
• Description: Oryza sativa osa-miR3980a-3p mature miRNA
• Sequence: 147 - CUGGCCGAGGCCGUCGAUUCU - 167
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21113019
   Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)
   "Li T, Li H, Zhang YX, Liu JY"
   "Nucleic Acids Res (2011) 39:2821-2833