Stem-loop sequence egr-mir-2b

Accession

MI0017777 (change log)

Description

Echinococcus granulosus miR-2b stem-loop

Gene family

MIPF0000049; mir-2

Literature search

1 open access papers mention egr-mir-2b
(2 sentences)

Stem-loop

   --       cg        ---     g    uc     a 
5'   ugucagu  guguccca   agggu guga  uacuc g
     |||||||  ||||||||   ||||| ||||  ||||| u
3'   acggucg  cacagggu   ucccg cacu  augag g
   cg       ua        ucg     a    --     g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM52419v1; GCA_000524195.1): APAU02000027.1: 925755-925830 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from egr-mir-2b

• egr-mir-71: APAU02000027.1: 925546-925631 [+]
• egr-mir-2c: APAU02000027.1: 925649-925726 [+]
• egr-mir-2d: APAU02000027.1: 925654-925717 [-]
• egr-mir-2b: APAU02000027.1: 925755-925830 [+]

Database links

• miRBase Tracker:MI0017777

Mature sequence egr-miR-2b-5p

• Accession: MIMAT0037420
• Sequence: 11 - ugucccaaggguggugaucuacu - 33
• Evidence: experimental; Illumina [2]

Mature sequence egr-miR-2b-3p

• Accession: MIMAT0020230
• Sequence: 43 - uaucacagcccugcuugggaca - 64
• Evidence: experimental; cloned [1], Illumina [2]

References

1. PMID:21219906 "Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes" Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M Int J Parasitol. 41:439-448(2011).
2. PMID:25656283 "microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach" Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC Parasit Vectors. 8:83(2015).