Stem-loop egr-mir-2b

Accession

MI0017777

Description

Echinococcus granulosus egr-mir-2b precursor miRNA

Literature search

1 open access papers mention egr-mir-2b
(3 sentences)

Sequence

ugucagucggUGUCCCAAGGGUGGUGAUCUACUcagugggagUAUCACAGCCCUGCUUGGGACAcaugcuggcagc
(((((((..(((((((((((((.((((..(((((.....))))))))).)))))...))))))))..)))))))..

Structure

--       cg        ---     G    UC     a 
  ugucagu  gUGUCCCA   AGGGU GUGA  UACUc g
  |||||||  ||||||||   ||||| ||||  ||||| u
  acggucg  cACAGGGU   UCCCG CACU  AUgag g
cg       ua        UCG     A    --     g 

Annotation confidence Not enough data

Genome context

APAU02000027.1: 925755-925830 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from egr-mir-2b

Mature egr-miR-2b-3p

• Accession: MIMAT0020230
• Description: Echinococcus granulosus egr-miR-2b-3p mature miRNA
• Sequence: 43 - UAUCACAGCCCUGCUUGGGACA - 64
• Evidence: experimental ; cloned [1], Illumina [2]

Mature egr-miR-2b-5p

• Accession: MIMAT0037420
• Description: Echinococcus granulosus egr-miR-2b-5p mature miRNA
• Sequence: 11 - UGUCCCAAGGGUGGUGAUCUACU - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 21219906
   Identification of Echinococcus granulosus microRNAs and their expression in different life cycle stages and parasite genotypes
   "Cucher M, Prada L, Mourglia-Ettlin G, Dematteis S, Camicia F, Asurmendi S, Rosenzvit M"
   "Int J Parasitol (2011) 41:439-448


2. PubMed ID: 25656283
   microRNA profiling in the zoonotic parasite Echinococcus canadensis using a high-throughput approach
   Macchiaroli N, Cucher M, Zarowiecki M, Maldonado L, Kamenetzky L, Rosenzvit MC
   Parasit Vectors (2015) 8:83