miRBase entry: gma-MIR169g

Stem-loop gma-MIR169g


Accession
MI0017837
Description
Glycine max gma-MIR169g precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
24 open access papers mention gma-MIR169g
(106 sentences)

Sequence

aaguagagugCAGCCAAGGAUGACUUGCCGGagcaauaagaauaaacaauaaaauguaucuauuuauaacauucuucuucuucuucuucuucuuucacgccggcaaguuguucuuggcuacauuuuguuu
...(((((((.((((((((((((((((((((((.((.(((((..........(((((...........)))))..........))))).))))......)))))))))))))))))))).)))))))...

Structure
aag       C                    ------  c  u     uaaacaauaa     aucu 
   uagagug AGCCAAGGAUGACUUGCCGG      ag aa aagaa          aaugu    a
   ||||||| ||||||||||||||||||||      || || |||||          |||||    u
   guuuuac ucgguucuuguugaacggcc      uc uu uucuu          uuaca    u
uuu       a                    gcacuu  -  c     cuucuucuuc     auau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr17: 4591798-4591927 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from gma-MIR169g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR169g

Accession MIMAT0020987
Description Glycine max gma-miR169g mature miRNA
Sequence 11 - CAGCCAAGGAUGACUUGCCGG - 31
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506