miRBase entry: gma-MIR4998

Stem-loop gma-MIR4998


Accession
MI0017864
Description
Glycine max gma-MIR4998 precursor miRNA
Gene family
MIPF0001304; MIR4998

Literature search
1 open access papers mention gma-MIR4998
(2 sentences)

Sequence

aauuugggagaagggcugcggucuaggucgagAGUUUCGUGACUACAACUUCUGaaacgcgucuuauuuaugugaagaugacgugcuucagaagcuguagucacgaaacccucgaccuugacggcguccuu
..........((((((.((.(((.((((((((.((((((((((((((.((((((((.((((((...(((....)))...)))))).)))))))).)))))))))))))).)))))))).))).))))))))

Structure
aauuugggag      u  g   u        A              A        a      uua   a 
          aagggc gc guc aggucgag GUUUCGUGACUACA CUUCUGaa cgcguc   uuu u
          |||||| || ||| |||||||| |||||||||||||| |||||||| ||||||   |||  
          uuccug cg cag uccagcuc caaagcacugaugu gaagacuu gugcag   aag g
----------      -  g   u        c              c        c      uag   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature gma-miR4998

Accession MIMAT0021016
Description Glycine max gma-miR4998 mature miRNA
Sequence 33 - AGUUUCGUGACUACAACUUCUG - 54
Evidence experimental
454 [1], Illumina [2]

References

  1. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  2. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506