miRBase entry: hsa-mir-5001

Stem-loop hsa-mir-5001


Accession
MI0017867
Symbol
HGNC: MIR5001
Description
Homo sapiens hsa-mir-5001 precursor miRNA

Literature search
4 open access papers mention hsa-mir-5001
(9 sentences)

Sequence

487 reads, 52 reads per million, 59 experiments
agcucagggcggcugcgcagAGGGCUGGACUCAGCGGCGGAGCUggcugcuggccucagUUCUGCCUCUGUCCAGGUCCUUgugacccgcccgcucuccu
(((...((((((.(.((((.((((((((((..((.(((((((((((((...))))..))))))))).))))))).)))))))))).))))))))).....

Structure
-----   uca      c g    g     -     UC  C         --    g 
     agc   gggcgg u cgca AGGGC UGGAC  AG GGCGGAGCU  ggcu  
     |||   |||||| | |||| ||||| |||||  || |||||||||  |||| c
     ucg   cccgcc a gugU UCCUG ACCUG  UC CCGUCUUga  ccgg  
uccuc   ---      c -    -     G     --  U         cu    u 


Annotation confidence High
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Genome context
chr2: 232550474-232550573 [-]

Disease association
hsa-mir-5001 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hsa-miR-5001-5p

Accession MIMAT0021021
Description Homo sapiens hsa-miR-5001-5p mature miRNA
Sequence 21 - AGGGCUGGACUCAGCGGCGGAGCU - 44
Evidence not_experimental
Database links
Predicted targets

Mature hsa-miR-5001-3p

Accession MIMAT0021022
Description Homo sapiens hsa-miR-5001-3p mature miRNA
Sequence 60 - UUCUGCCUCUGUCCAGGUCCUU - 81
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 21911355
    miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
    "Friedlander MR, Mackowiak SD, Li N, Chen W, Rajewsky N"
    "Nucleic Acids Res (2012) 40:37-52

  2. PubMed ID: 21558790
    Enhancing miRNA annotation confidence in miRBase by continuous cross dataset analysis
    "Hansen TB, Kjems J, Bramsen JB"
    "RNA Biol (2011) 8:378-383