Stem-loop ath-MIR5020a

Accession

MI0017888

Description

Arabidopsis thaliana ath-MIR5020a precursor miRNA

Gene family

MIPF0001226; MIR5020

Sequence

aaauaaagcaaaucuaagugagagauaauuaugagugauggccauggcaUGGAAGAAGGUGAGACUUGCAugaaucgugaaucaaaaccuccaugauuaucacugcaagucguaccuuuuuccuagccaugauaaucacugaguauuaaaucuuagaucuuguacuauuu
(((((..(((((((((....(((..((((..(.((((((...((((((..(((((((((((.(((((((((((((((((............))))))..))).)))))))).)))))))))))..))))))...)))))).)..))))..)))))))).))))..)))))

Structure

     aa    -     agug   ga    ua g      ggc      aU           A        -   --      aauca 
aaaua  gcaa aucua    aga  uaau  u agugau   cauggc  GGAAGAAGGUG GACUUGCA uga  aucgug     a
|||||  |||| |||||    |||  ||||  | ||||||   ||||||  ||||||||||| |||||||| |||  ||||||      
uuuau  uguu uagau    ucu  auua  a ucacua   guaccg  ccuuuuuccau cugaacgu acu  uaguac     a
     ca    c     ----   aa    ug g      aua      au           g        c   au      cucca 

Annotation confidence Not enough data

Genome context

chr4: 6791301-6791470 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR5020a

Mature ath-miR5020a

• Accession: MIMAT0020524
• Description: Arabidopsis thaliana ath-miR5020a mature miRNA
• Sequence: 50 - UGGAAGAAGGUGAGACUUGCA - 70
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620


2. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176