miRBase entry: gma-MIR5040

Stem-loop gma-MIR5040


Accession
MI0017917
Description
Glycine max gma-MIR5040 precursor miRNA


Sequence

uaguuuggauaauaagcuuuuuagauaggaaacucaaugagaauauuacugauugaaggucAUGAUAUAUAACAAGCAUGAGgauauaaauguuauauacaauguuguuguguuugguugauagugaaucuaaugaaccgggggaaugaaa
.((((((.....))))))..((((((.......(((((.((.......)).)))))...((((..(((....(((((((((.(((((...(((.....)))))))).)))))))))....)))))))))))))..................

Structure
uaguuuggauaauaagcuuu      aggaaacucaaugagaauauuacugauugaagg    GA   AUAA         G     aaa   u 
                    uuagau                                 ucAU  UAU    CAAGCAUGA gauau   ugu a
                    ||||||                                 ||||  |||    ||||||||| |||||   ||| u
                    aaucua                                 agug  aua    guuuguguu uugua   aca a
--aaaguaagggggccaagu      ---------------------------------    --   guug         g     ---   u 


Annotation confidence Not enough data
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Genome context
chr12: 37310768-37310918 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR5040
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR5040

Accession MIMAT0021067
Description Glycine max gma-miR5040 mature miRNA
Sequence 62 - AUGAUAUAUAACAAGCAUGAG - 82
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 21751852
    Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
    "Radwan O, Liu Y, Clough SJ"
    "Mol Plant Microbe Interact (2011) 24:958-972